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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A09G1165 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 365aa MW: 41141.9 Da PI: 6.4982 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A09G1165 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15 | 7.1e-05 | 286 | 308 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F + + ++H +++
Gh_A09G1165 286 FMCGKCGKAFAVRGDWRTHEKNC 308
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MADHPYSSFF SGWYKFNPLQ NYPSPNPPPQ HNPNFFTQNL YNNTTIFMRN DPTNTNSFFH 60
YQTSCSSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG 120
GGLVLSSGAA EDEDEDETVT VALHIGLPSP TASELASVLS SSSSFSEMRD KDGDEYPVNT 180
LNKGQYWIPT PSQILIGPTQ FSCPVCCKTF NRYNNMQQMH MWGHGSEYRK GPESLKGSQP 240
TGMLRLPCYC CAPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCGK CGKAFAVRGD 300
WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI KAFGKGHAAY NITISGLEED DDPASEVEQD 360
YDFMQ
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM485732 | 2e-91 | AM485732.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X068454.12, clone ENTAV 115. |
