PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G1077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 524aa MW: 58477.1 Da PI: 7.0592 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.6 | 4.2e-10 | 164 | 224 | 1 | 55 |
AP2 1 sgykGV...rwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g Gh_A09G1077 164 SIYRGVtrrCRHRWTGRYEAHLWDnSCRrEGqSRKGRQAGGYDKEEKAARAYDLAALKYWG 224 569***999999************5555444555*************************98 PP | |||||||
2 | AP2 | 42.8 | 1.3e-13 | 269 | 318 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f +eeAa+a++ a+ k++g Gh_A09G1077 269 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSAEEEAAEAYDIAAIKFRG 318 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-12 | 164 | 234 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.51E-17 | 164 | 234 | No hit | No description |
SMART | SM00380 | 3.0E-19 | 165 | 238 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-11 | 165 | 233 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-6 | 165 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.674 | 165 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 166 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-16 | 267 | 326 | No hit | No description |
SuperFamily | SSF54171 | 4.45E-17 | 267 | 327 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-31 | 268 | 332 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.874 | 268 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 268 | 326 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-8 | 269 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 308 | 328 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MNSNNWLSFP LSPSNSSLHS SQSHDHHQFN VGLVNDNMEN PFQTQEWNLI NTHDNTSEVP 60 KVADFLGVSK SQTPSLDLVA FNTIHQSNHP ADYSFQHNNI VQVQNSTTVI ASNNNNELLE 120 NATNLQSLTL SMGSGKGSTS AENSANIVEA PPRRTLDTFG QRTSIYRGVT RRCRHRWTGR 180 YEAHLWDNSC RREGQSRKGR QAGGYDKEEK AARAYDLAAL KYWGTSTSTN FPISNYEKEI 240 EEMKHMTRQE FVAAIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 300 AEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKAILESNT LPIGGGAAKR LKEAQALESS 360 RKREEMIALG SSFQYGSSST SRLPQAYPLM QFDHQSQQQP LLTLQNHDIN SQYTQEDTSS 420 STFHQNYIRT QLQLHQQFYN NTYIQNNPAL LHGLMNLSCS SPSVVDNNGG SGSSGSYSGG 480 YVGNSTEEEG LVKVDYDMQS GGYGGWSVDS VQGSNPGVYP MWNE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF495617 | 2e-94 | JF495617.1 Gossypium herbaceum clone NBRI_Gh_M126 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610332.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2P5RJT2 | 0.0 | A0A2P5RJT2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G129400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 0.0 | AP2 family protein |