PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1074
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 321aa    MW: 35746.1 Da    PI: 5.9779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1074genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-142168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++lv +    G g+W+ +ar  g+ R++k+c++rw +yl
      Gh_A09G1074 21 KGLWSPEEDDKLVTYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 68
                     678*******************************************97 PP
2Myb_DNA-binding49.21.2e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v ++  lG++ W+ Ia++++ gRt++++k++w++
      Gh_A09G1074  74 RGAFSPQEQELIVYLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 117
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8341668IPR017930Myb domain
SuperFamilySSF466891.8E-2719115IPR009057Homeodomain-like
SMARTSM007172.5E-112070IPR001005SANT/Myb domain
PfamPF002492.8E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-222275IPR009057Homeodomain-like
CDDcd001674.43E-92468No hitNo description
PROSITE profilePS5129423.94669123IPR017930Myb domain
SMARTSM007176.6E-1573121IPR001005SANT/Myb domain
PfamPF002491.8E-1374117IPR001005SANT/Myb domain
CDDcd001671.86E-1076116No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2576124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMRQPPSMKG NISNGTNKHK KGLWSPEEDD KLVTYMLTNG QGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EQELIVYLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTIK  120
KRLKYSSSTA SHNASDSSLE PNKDAMAARL MTMLEHEVPP MYLDLSSAWS NSFLQSMVLN  180
HSGNSLLMLQ HGKNVVGPVG YFDPTGSCVT QAEVNGDSSL GESEIFGSVD NGIERELYVP  240
PLESIGKNLK IENSVDGNIN NGSNIINTSG VRSNKNNNMS INIDSDDVGS FWIGEELKVG  300
EWDMENLMKD VSSFPFLDFQ S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26211237108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5897875e-82JX589787.1 Gossypium hirsutum clone NBRI_GE24554 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016669207.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1U8HT540.0A0A1U8HT54_GOSHI; transcription factor MYB46-like
STRINGGorai.006G129100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-69myb domain protein 46