PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0997
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 515aa    MW: 56646.6 Da    PI: 9.9187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0997genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157696323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k F r  nL+ H r H
  Gh_A09G0997 76 CEICNKGFQRDQNLQLHRRGH 96
                 *******************88 PP
2zf-C2H211.80.00073150172123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Gh_A09G0997 150 WKCEKCSKKYAVQSDWKAHSKIC 172
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-77396No hitNo description
Gene3DG3DSA:3.30.160.602.4E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.117496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355100115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-7145170No hitNo description
SMARTSM00355140150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MMSHDGISNS IPSTIRGLTQ QPNPNPNPTL SVNPSKKKRN LPGTPGKSVN FHSSDPDAEV  60
IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD  180
CGTLFSRKDS FITHRAFCDA LAEESGRFTS VSTTTMNPSA FTNDLTHIGG ADNYETGFRP  240
EFAAGSELVD NGLQKPRLQL WLDQANSQLN PIGIQSNANA FLAPKSTSLP ELGIAAAPMN  300
MFGSLSQSQQ WLSQYPQASF PGANLSMSSA LQRGPKQEEN KGDLSESITS LYSNNTQNSL  360
RQNHTHMSAT ALLQKAAQMG STRSNPTITN SGLFGLMSSP PSTIPSPIND HNKNEAYYKL  420
FKQANQSENI NEVVSSLPST QAAIIKDGSF VNNASMKANE RQGGQAVASK LNTNANEVEA  480
SLTRDFLGVG SQSSRPFFQQ EFAKFASMGS VQPWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36146212369Zinc finger protein JACKDAW
5b3h_F1e-36146212369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100112KLKQRTNKEVRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, especially in vascular initials, cortex, endodermis, and quiescent center (QC). {ECO:0000269|PubMed:25829440}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775696e-95JX577569.1 Gossypium hirsutum clone NBRI_GE9421 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485236.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-116IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A2P5Y2Z20.0A0A2P5Y2Z2_GOSBA; Uncharacterized protein
STRINGGorai.006G120000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]