PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0994
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 205aa    MW: 23544.3 Da    PI: 9.1754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0994genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-144698155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 ++ +hn+ Er RR+++Ns f+ Lr+llP a   + kK+   +++ +Av+YI +Lq
  Gh_A09G0994 46 KKLNHNASERHRRKKVNSLFSSLRSLLPLA--DQMKKVRIPATVSEAVKYIPELQ 98
                 6789*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5074597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-124698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1646117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1446111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-1051103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MCALAPFPTP NWPLLNPIGH QLNYIYENNE TLDSVPQASF DPCVVKKLNH NASERHRRKK  60
VNSLFSSLRS LLPLADQMKK VRIPATVSEA VKYIPELQEQ VERLVHKKEE LLLRIFQQGG  120
IKRCRDGRCS SSATVSINRL SSDSEVVIQI TLRKDRVQKI QLSEFLHILE EQQGLILLNA  180
TSFESFGAGM IFYNIHLQVH IYIYF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5827962e-83JX582796.1 Gossypium hirsutum clone NBRI_GE15694 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670077.11e-151PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8HVM71e-150A0A1U8HVM7_GOSHI; transcription factor ORG2-like
STRINGGorai.006G120300.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-34bHLH family protein