PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0993 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 821aa MW: 91560.7 Da PI: 6.8029 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.8e-24 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el+ Gh_A09G0993 159 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYKQTRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVAGDAVLFL--RGEDGELR 254 99****************************8444556789************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Gh_A09G0993 255 LGIRRA 260 ***996 PP | |||||||
2 | Auxin_resp | 117 | 1.6e-38 | 285 | 366 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFv++++k+ k++ ++v++G+Rfkm+f+++ds+err+sG+v+g+ d+dp++WpnS+Wr+L Gh_A09G0993 285 VANALSTKSMFHVFYSPRASHAEFVIPFRKYFKSIANSVCIGTRFKMRFDMDDSPERRFSGVVMGMGDSDPYKWPNSRWRCL 366 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-41 | 151 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-44 | 152 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.42E-24 | 157 | 259 | No hit | No description |
SMART | SM01019 | 7.2E-25 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-22 | 159 | 260 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-32 | 285 | 366 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-5 | 688 | 780 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.32E-10 | 692 | 775 | No hit | No description |
PROSITE profile | PS51745 | 21.017 | 696 | 780 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MEIDLNHALS EVEKTAVCNG DCDKLNCVCS SSSSNLASPP CTSSIYLELW HACAGPLTSL 60 PKKGNLVVYF PQGHLEQLAS ASHFSPLEIS TFDLPPHIFC KVVNVQLLAN KENDEVYTQL 120 TLLPQPESRG PNLESKQLDE LGVDEGDDGS PKRSTPHMFC KTLTASDTST HGGFSVPRRA 180 AEDCFPPLDY KQTRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI FVSQKNLVAG 240 DAVLFLRGED GELRLGIRRA VRPRNCLPES VIAKQNSYPN VLSPVANALS TKSMFHVFYS 300 PRASHAEFVI PFRKYFKSIA NSVCIGTRFK MRFDMDDSPE RRFSGVVMGM GDSDPYKWPN 360 SRWRCLMVRW DEDNMIDRHE RVSPWEIDPS ASLPPLSIQS SPRLKKLRTG PQAAAPDTLI 420 TGANLSARLV ILLHFYTRLM YASCVVFLSG GSRFLDFEEP LRSSKVLQGQ ENVGFVSPLY 480 GHDTVSRPLD FEMQSPAHHQ SLASTGIEKS NISEFMRVCS TTYTGFADSN RFPKVLQGQE 540 ICQLRSLTQK ADLNLGVWAK TNVGCNSFNM HQTLKTNCYP LASEGLRNMY FPYSEFLKTV 600 QEPTMSSYAC PLPRGNVPFN ASSIRTGVGV IVDGFRKPNQ LNEHKPLENI PSPASENNSR 660 NQQDDSFKRN VAGCKLFGFP LNVESPTPNS QNSGKRSCTK VHKQGSLVGR AIDLSRLYGY 720 DDLMIELERL FGMEGVLSDP DKGWRVLYTD SENDVMVVGD DPWHEFCEVV SKIHIYTQEE 780 VEKMTIGTGS DDTQSCLEQA AVIMEASKSS SVGQPDSSSP M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-125 | 48 | 389 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-125 | 48 | 389 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-125 | 48 | 389 | 22 | 354 | Auxin response factor 1 |
4ldx_A | 1e-125 | 48 | 389 | 22 | 354 | Auxin response factor 1 |
4ldx_B | 1e-125 | 48 | 389 | 22 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13437 | 1e-162 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016669103.1 | 0.0 | PREDICTED: auxin response factor 4-like isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A1U8HYS5 | 0.0 | A0A1U8HYS5_GOSHI; Auxin response factor | ||||
STRING | Gorai.006G120400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |