PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0969

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 233aa MW: 26766 Da PI: 7.2187

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0969	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.7e-09	24	70	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT Ed+ + ++ +++ g +W++Ia+ ++ g+++k++ +++++ Gh_A09G0969 24 HWTRVEDKVFEQCLVLFPEGisdRWEKIAEQIP-GKSAKEVEQHFHML 70 6******************************.*********976 PP
2	Myb_DNA-binding	46.6	8.1e-15	123	167	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Gh_A09G0969 123 PWTEEEHKLFLIGLQKFGKGDWRSISRNVVVTRTPTQVASHAQKY 167 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1E-6	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.38E-10	24	77	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-8	24	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-5	24	68	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.504	25	71	IPR017877	Myb-like domain
CDD	cd00167	7.43E-8	25	71	No hit	No description
PROSITE profile	PS51294	20.829	116	172	IPR017930	Myb domain
SuperFamily	SSF46689	6.9E-17	118	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-17	119	171	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.1E-11	120	166	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-11	120	170	IPR001005	SANT/Myb domain
CDD	cd00167	1.45E-9	123	168	No hit	No description
Pfam	PF00249	9.1E-13	123	167	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MYQDNNHYNG DPLFIESVAA ATTHWTRVED KVFEQCLVLF PEGISDRWEK IAEQIPGKSA 60 KEVEQHFHML VYDVYEIDAG RVQVPQYADD SVMLSQSWDS HNQISFVSKS KHHGDGERKK 120 GTPWTEEEHK LFLIGLQKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QSAVKKERKR 180 SSIHDITTVD SKTMDVPVEQ NRGSEPHGMV QQATQLQQLP HTGHFVGKYG YPM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6850	0.0	leaf\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732485.1	1e-176	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	7e-60	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1U8N0A7	1e-175	A0A1U8N0A7_GOSHI; transcription factor DIVARICATA-like
STRING	Gorai.006G118200.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-82	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]