PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0914

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 208aa MW: 24006.5 Da PI: 6.4093

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0914	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.8e-09	11	57	3	46
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 +W+ d+l+ +a ++ ++ +W++Ia+ ++ g+++ +++ ++ + Gh_A09G0914 11 AWSWHQDKLFERALVMFSNDessdRWEKIAAQVP-GKSAADVRRHYED 57 8*******************************.*********76 PP
2	Myb_DNA-binding	44.1	4.8e-14	111	155	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky Gh_A09G0914 111 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 155 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.212	7	62	IPR017884	SANT domain
SMART	SM00717	1.3E-5	8	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.9E-9	10	67	IPR009057	Homeodomain-like
CDD	cd00167	5.59E-5	11	55	No hit	No description
Pfam	PF00249	1.7E-7	11	57	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.214	104	160	IPR017930	Myb domain
SuperFamily	SSF46689	3.89E-17	106	161	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-10	108	158	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.1E-17	108	158	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.3E-12	108	154	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-8	111	156	No hit	No description
Pfam	PF00249	1.2E-11	111	155	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MIRTNDDASS AWSWHQDKLF ERALVMFSND ESSDRWEKIA AQVPGKSAAD VRRHYEDLEH 60 DVLEIESGRV ELPSYEGELE SASWVNESGR SQVWVGSKGK ERESERRKGV PWTEEEHRLF 120 LIGLQKYGKG DWRSISRNAV VSRTPTQVAS HAQKYFLRLN SVNEKNKKRS SIHDLKMGDD 180 NSMDPQSKFF NEQGSSFVNN HGYEFPLL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.26141	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584872	4e-94	JX584872.1 Gossypium hirsutum clone NBRI_GE18283 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669030.1	1e-153	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_017609892.1	1e-153	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	6e-58	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0B0N539	1e-151	A0A0B0N539_GOSAR; Transcription factor MYB1R1
TrEMBL	A0A1U8HSM4	1e-151	A0A1U8HSM4_GOSHI; transcription factor DIVARICATA-like
TrEMBL	A0A2P5WRK9	1e-151	A0A2P5WRK9_GOSBA; Uncharacterized protein
STRING	Gorai.006G113100.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20566	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-61	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]