PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A09G0913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25840 Da PI: 6.5195 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.9 | 6.3e-43 | 4 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdi.ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + GfrF Pt+eelv++yL+++++g++ +++ vi+ ++i y++ePwdLpk +k++ ++w++F++r++++a+g r++r+t+sgyWkatg++ v+s Gh_A09G0913 4 AIGFRFFPTEEELVSFYLRNQLQGTRQDMHLVIPVLNIfYDLEPWDLPKlageLCKGDVEQWFYFIPRQEREARGGRASRTTASGYWKATGSSGFVYS 101 57***************************889****873678******656765566888************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++l+g+kkt+vfykg+ap+g+kt+W m+eyr+ Gh_A09G0913 102 SDDRLIGMKKTMVFYKGKAPNGRKTKWKMNEYRA 135 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 44.587 | 3 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-45 | 3 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-22 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MAVAIGFRFF PTEEELVSFY LRNQLQGTRQ DMHLVIPVLN IFYDLEPWDL PKLAGELCKG 60 DVEQWFYFIP RQEREARGGR ASRTTASGYW KATGSSGFVY SSDDRLIGMK KTMVFYKGKA 120 PNGRKTKWKM NEYRAIEALS DPYVAAPPKL RHDFSLCRVY VASSSSRAFD RRPLEAHNNA 180 ATTSGGASGT SHAGGDHYNP AEASEDEFWE LINNLEEHAI GWEQLNEI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-31 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-31 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-31 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-31 | 1 | 167 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-31 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-31 | 1 | 167 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.3801 | 0.0 | ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ130042 | 0.0 | KJ130042.1 Gossypium barbadense NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016669029.1 | 1e-172 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 8e-85 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U8I061 | 1e-171 | A0A1U8I061_GOSHI; NAC domain-containing protein 90-like | ||||
STRING | Gorai.006G113000.1 | 1e-165 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-84 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|