PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0859
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 683aa    MW: 75863.3 Da    PI: 4.4058
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0859genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10528571146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ +
      Gh_A09G0859 528 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 571
                      569*****************88.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.0E-25524603No hitNo description
PROSITE profilePS5129310.632526577IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.0E-6526572IPR009057Homeodomain-like
SMARTSM007171.3E-8527575IPR001005SANT/Myb domain
CDDcd001678.19E-7530571No hitNo description
SuperFamilySSF466894.86E-10530579IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEESDFFQDE PVVTQARAGA KFQPKFKCKA KDGTSGSIPS KPPVILKDEA TTVASTAINA  60
VQVVEPDNVV YDSKGSQLIN PSQVTVTDSL LAEAAVPNCC NDTNSSFERT VGENTDLYFG  120
LECLDPLLTQ SSTNDGDNRN DHERTRTEFQ EAGVFPDVDT QDIMFGMTTA SGMRTGKFKP  180
KPRLQTSVPA SPPTVVEWVM HPATAQFVPS ETAFEEGSIP DFPSDHVPNC APVDLGSFIP  240
PDPSTSECPV NEELANLAVA SNAGVDLSGD VPDMPTEVVF FFLPQLFLSL VSNPSRESKQ  300
SSTGGEVNGK GEARKQLREQ VTTPHIVDDL EDGTCNDDGL AAELPSCYAV DEDKDDNDDD  360
EFNVEHASPK RRTSKRSKKP VKESEKPPRK RKKANEAQKH KKANEASDNP EKEQRKKFSH  420
STRRKRRFVD ESLLTTPEDE IDFAKVALKD LILLADYKER IAKKEAKALK EPLTDQSTQK  480
RLNEENAHDE ESSIASEQDQ GIMDDQVNGS AQSDSYFNYQ TLMTKEPRAR WSKQDTELFY  540
GAIRQFGPDF SLIQQLFPGR SRHQIKLKFK NEERRSPFKI SEALASRASD HSYFAKVIKQ  600
LQQVSGADPE AHGDVSNDLT REEEEVTPEN NEEAAKSKQD EDVAVGDQEA DITQDHSSLK  660
SNEMDDEDED DDDEILNSYQ SAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369391KRRTSKRSKKPVKESEKPPRKRK
2370376RRTSKRS
3385391KPPRKRK
4388392RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.233880.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668835.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBLA0A1U8HS330.0A0A1U8HS33_GOSHI; transcription factor TFIIIB component B'' homolog
STRINGGorai.006G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-40MYB_related family protein