PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0675

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 347aa MW: 38168.3 Da PI: 7.8682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0675	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	239	276	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Gh_A09G0675 239 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 276 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.503	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.81E-5	237	280	No hit	No description
SuperFamily	SSF47459	2.22E-11	237	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-8	237	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK 60 HQQAADSHNN GSSVFIDSSL KMMDFGLSST PDCNQSFQLS CRQEPVAMDS ALLQGLLFEP 120 DAQAQQHSLN FNNRSINHMP AGATYGANAN GILSPPWPKL APFVRPSLPK QLPCSLPLPQ 180 SQVLLQTFEN KLNCPRPTIE TNTKQVRNLA SVMKKGSGES PLKRPRIETP LPLPTFKVRK 240 EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHDQV NVLSTPYVKQ AATSMQQGID 300 HRLKDTEGSK QDLRSRGLCL VPISTTFTVA NETTADFWTP AFVGTLR

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK  60
HQQAADSHNN GSSVFIDSSL KMMDFGLSST PDCNQSFQLS CRQEPVAMDS ALLQGLLFEP  120
DAQAQQHSLN FNNRSINHMP AGATYGANAN GILSPPWPKL APFVRPSLPK QLPCSLPLPQ  180
SQVLLQTFEN KLNCPRPTIE TNTKQVRNLA SVMKKGSGES PLKRPRIETP LPLPTFKVRK  240
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHDQV NVLSTPYVKQ AATSMQQGID  300
HRLKDTEGSK QDLRSRGLCL VPISTTFTVA NETTADFWTP AFVGTLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670221.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X1
Refseq	XP_017609192.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1U8HW24	0.0	A0A1U8HW24_GOSHI; transcription factor bHLH112-like isoform X1
STRING	Gorai.006G085000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24650	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-53	bHLH family protein