PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0631

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 942aa MW: 106594 Da PI: 7.9279

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0631	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.7	3.3e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++e k+rwl+++ei+aiL n++ + + ++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf rrc Gh_A09G0631 29 MEEaKSRWLRPNEIHAILCNHKYFPIYVKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRC 126 55669******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ Gh_A09G0631 127 YWLLDKSLEHIVLVHYRETQ 146 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.048	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.2E-76	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.38E-9	388	475	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	3.26E-15	565	690	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-14	575	691	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.59E-14	579	688	No hit	No description
PROSITE profile	PS50297	14.186	582	688	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.031	624	658	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.751	624	661	IPR002110	Ankyrin repeat
Pfam	PF00023	5.1E-4	625	660	IPR002110	Ankyrin repeat
SMART	SM00248	2400	668	699	IPR002110	Ankyrin repeat
SMART	SM00015	280	739	761	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.504	740	769	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.67E-5	786	863	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	69	792	814	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.327	793	822	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0013	815	837	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.999	816	840	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.3E-4	820	837	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.67E-5	895	923	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	14	895	917	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.535	897	925	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDVGCSSLLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYVKPVN 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA 180 GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRGNLL VSILNNTPCS 240 FAKLLTHSIL MADNNSCFQQ LNQTAGNGFL NYGGPISADN LSMEISMLVN LVEPVAQSNN 300 TYFNTPTTVC NTISSSQINP DVQQKDSIAT GAGDPLDLLI NDGLNGQDSF GKWMNYTITE 360 SPVSGDSMQE SSVSSVQDSF TSPEHIFTIT EVSHEWAYST EKTKILVTGF FHQAYQHLVK 420 SNLFCVCGDV CNPAEIIQVG VYRSVLPQHS PGLVNLYMSL DGHKPISQVL SFEYRVPLSH 480 DPLVPVEDES RWKEFRLQMR LAYLLFSTSK SLNILSGKVS PNTLKEVKTF AQKTTSISNS 540 WTYLLKSIEE NRASFTQAKD GLFEIALKNR LKDWLLERII EGSKITDFDT EGLGVLHLCA 600 ILGYTWAIHL FSWSGLSLDF RDKRGWTALH WAAFYGRQVR FTEKMVAALL SAGAKPNLVT 660 DPTTQNPNGC TAADLASLKG YDGLAAYLSE EALVAQFNEM AVAGNASGSL KTSRTEVTHT 720 DTLNEDELYL KESLAAYRTA ADAAARIQNA FRAHSLKIRT KAIESSTPED EARSIVAAMK 780 IQHAFRNFET KRKMAAAARI QYRFRTWKIR KEFLNMRHQA TKIQAAFRGL LVRRQYRKIT 840 WSVGVLEKAI LRWRLKRRGL RGLQINTVDT VTEQRPESDT EEDFYRTSRK QAEQRVEKAV 900 VRVQAMFRSK KAQEDYRRMK LAYDQAMLEY QSLRDPTSCM DA

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDVGCSSLLV GSEIHGFRTL ADLDVQTMME EAKSRWLRPN EIHAILCNHK YFPIYVKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKSLEHIVLV HYRETQESQG SPATPGNSNS SSITDQSTPL NVMEEFDSGA  180
GNAYYEEPGN SVDVRNHEMR LHEINTLEWD ELLVTNDSND STISRRGNLL VSILNNTPCS  240
FAKLLTHSIL MADNNSCFQQ LNQTAGNGFL NYGGPISADN LSMEISMLVN LVEPVAQSNN  300
TYFNTPTTVC NTISSSQINP DVQQKDSIAT GAGDPLDLLI NDGLNGQDSF GKWMNYTITE  360
SPVSGDSMQE SSVSSVQDSF TSPEHIFTIT EVSHEWAYST EKTKILVTGF FHQAYQHLVK  420
SNLFCVCGDV CNPAEIIQVG VYRSVLPQHS PGLVNLYMSL DGHKPISQVL SFEYRVPLSH  480
DPLVPVEDES RWKEFRLQMR LAYLLFSTSK SLNILSGKVS PNTLKEVKTF AQKTTSISNS  540
WTYLLKSIEE NRASFTQAKD GLFEIALKNR LKDWLLERII EGSKITDFDT EGLGVLHLCA  600
ILGYTWAIHL FSWSGLSLDF RDKRGWTALH WAAFYGRQVR FTEKMVAALL SAGAKPNLVT  660
DPTTQNPNGC TAADLASLKG YDGLAAYLSE EALVAQFNEM AVAGNASGSL KTSRTEVTHT  720
DTLNEDELYL KESLAAYRTA ADAAARIQNA FRAHSLKIRT KAIESSTPED EARSIVAAMK  780
IQHAFRNFET KRKMAAAARI QYRFRTWKIR KEFLNMRHQA TKIQAAFRGL LVRRQYRKIT  840
WSVGVLEKAI LRWRLKRRGL RGLQINTVDT VTEQRPESDT EEDFYRTSRK QAEQRVEKAV  900
VRVQAMFRSK KAQEDYRRMK LAYDQAMLEY QSLRDPTSCM DA

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016668712.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P5YTE2	0.0	A0A2P5YTE2_GOSBA; Uncharacterized protein
STRING	Gorai.006G079000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]