PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A09G0474

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 322aa MW: 35969.6 Da PI: 8.2964

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A09G0474	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	2.9e-56	4	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv++ +++ ++i +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++++g Gh_A09G0474 4 LPPGFRFHPTDEELITYYLSHKVSDITFTS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGGV 100 79***********************999.88***********999999**************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgek++Wvmheyrle Gh_A09G0474 101 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-63	2	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	4	151	IPR003441	NAC domain
Pfam	PF02365	6.7E-29	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MENLPPGFRF HPTDEELITY YLSHKVSDIT FTSKAIVDVD LNKCEPWDLP AKASMGEKEW 60 YFFSLRDRKY PTGLRTNRAT EAGYWKTTGK DKEIFRAGGV LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKHPFKASK EEWVVCRVFQ KSAAVKKPQP SSSSQPSLGS PCDANSIVNE 180 FGDVELPNLN INANPSCGFN DIATPSYSNN VNHGHMNAMN LNLDFGAASL PSSLSWPSSI 240 LSPNLSMNSF LFKALQLRNY QPRDVSGMDY SILSSTQGIN IPPFGTDLAS NFQGAAASSS 300 KVVVPMPQQQ QQEQPFNMDS MW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-54	3	157	19	174	NAC domain-containing protein 19
3swm_B	2e-54	3	157	19	174	NAC domain-containing protein 19
3swm_C	2e-54	3	157	19	174	NAC domain-containing protein 19
3swm_D	2e-54	3	157	19	174	NAC domain-containing protein 19
3swp_A	2e-54	3	157	19	174	NAC domain-containing protein 19
3swp_B	2e-54	3	157	19	174	NAC domain-containing protein 19
3swp_C	2e-54	3	157	19	174	NAC domain-containing protein 19
3swp_D	2e-54	3	157	19	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847223	0.0	KC847223.1 Gossypium hirsutum NAC domain protein NAC46 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016668449.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	7e-82	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8HYK0	0.0	A0A1U8HYK0_GOSHI; NAC domain-containing protein 100-like
STRING	Gorai.006G060900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-111	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]