PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0466
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 410aa    MW: 45922.9 Da    PI: 4.8039
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0466genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.1e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k+++++C  ++ +lC+ C ++ H+       Ht+v
  Gh_A09G0466 16 ARACDGCLRKRARWYCSADDAFLCQGCDTSVHSAnqlasrHTRV 59
                 578*****************************668899999987 PP
2CCT68.51.8e-23354397144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+a
  Gh_A09G0466 354 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRIKGRFVKRA 397
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5091461IPR000315B-box-type zinc finger
PfamPF006431.8E-71659IPR000315B-box-type zinc finger
CDDcd000212.01E-91761No hitNo description
PROSITE profilePS5101716.152354396IPR010402CCT domain
PfamPF062036.6E-18354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MISDKRAANA MGGKTARACD GCLRKRARWY CSADDAFLCQ GCDTSVHSAN QLASRHTRVR  60
LETASSRFNA SVINNSATDQ DALPAWHQGF TRKARTPRQN RSIQGQQKSE GKVWDLNPLV  120
PEVGCEDGSA EETEDQLLCR VPVFDPFSAE LRDMANENGN LVVDGFEDEG TCQLDDGLHG  180
FLPSDLDLAQ FAADVESLLG DGLDENNTCN HTKGTELMDC KQEDESNAFQ ERKIKDEEEE  240
EEGIITACCF DSDFDVTRSS YESPTIGDQE EEEKVVPVAE APIMDGEIKA EKKRSMLLRL  300
DYESVITAWA TQGSPWTSGT RPEFNPDDFM GSNPNEGIGG ICSQGKRNIT DGEREARVSR  360
YREKRRTRLF SKKIRYQVRK LNAEKRPRIK GRFVKRASFV GGDCFSYYIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364380RRTRLFSKKIRYQVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.64460.0leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834522e-69JX583452.1 Gossypium hirsutum clone NBRI_GE16495 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728445.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1U8MNS30.0A0A1U8MNS3_GOSHI; zinc finger protein CONSTANS-LIKE 16-like
STRINGGorai.006G061600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-91B-box type zinc finger protein with CCT domain