PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 33489.8 Da PI: 9.445 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.2e-11 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + + +t q++s+ qky Gh_A09G0416 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIS-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-15 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.033 | 34 | 88 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-6 | 36 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-18 | 37 | 86 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.5E-9 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-9 | 39 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.03E-7 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MALPDLGPFA NTATAASTVS SLEDSNKKIR KPYTITKSRE SWTEPEHDKF LEALQLFDRD 60 WKKIEAFISS KTVIQIRSHA QKYFLKVQKN GTNEHLPPPR PKRKATHPYP QKASKTAHGH 120 PQVSGSFPSS TALLDAGYAL RSDPSPMLMD PITSAAVSSW TSSAKPISFS QEKNGLRLTN 180 NSCSSSEDTL KTRQIEEITD QRNNGHALRV LPDFAQVYSF IGSVFDPKAT GHLQKLKKMD 240 PLDVETVLLL MRNLAINLAS PDLEDHRRLL SSYDVDMDTS DGSACKAVDK EQSKSITYNS 300 R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016731849.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-119 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1U8N201 | 0.0 | A0A1U8N201_GOSHI; protein REVEILLE 6-like isoform X1 | ||||
STRING | EOY23325 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-114 | MYB_related family protein |
Publications ? help Back to Top | |||
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