PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0414
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 575aa    MW: 62615.9 Da    PI: 7.0498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0414genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.39.4e-1092115753374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + ++e+A a+s+g++   +++Larl +la+ +g++ qRl+ +++ AL++rl++    + ++ p++e     s+e+++a++l++++sP++k+++++aNq
  Gh_A09G0414 211 QKIMEVASAISDGKTDVLNEILARLAQLANAKGNSEQRLTECMLLALKSRLNS----VESSPPVTELF---SKEHATATHLLYDLSPCFKLGFMAANQ 301
                  789*************************************************9....55444555554...99************************* PP

         GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  aIl+a+  +   +++HiiDfdi+qG+Q+++Ll+aL++R +g p +++iT +++  +g  e+l+++g +L+ +Ae++gv+++fnv+ + +l+dl+ e+L
  Gh_A09G0414 302 AILDATLDQpscKKLHIIDFDIGQGGQYATLLHALSERGRGNPaMIKITCIAD--NGGDERLKAVGFKLSLVAERFGVRLKFNVVPSLKLSDLSRESL 397
                  *****99888889*************************9555549********..77***************************8888********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   ++ +E laVnl+++l+r++desvs+e++rde+L+ vk+l P vv++veqe+++n+++F+ r+ ea+ yy alf+s+e++++re++er+kvE+  l r
  Gh_A09G0414 398 GCELDEPLAVNLAFKLYRMPDESVSVENPRDELLRRVKRLAPCVVTLVEQEINTNTAPFASRVGEAVGYYGALFESIESTFGRENSERVKVEEG-LLR 494
                  **********************************************************************************************.889 PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn vaceg++r+er+e ++kWr+r+++a F+  plse++a+++++ l+  ++ g++v+ee+g + +gW++r+L+++SaWr
  Gh_A09G0414 495 KIVNSVACEGRDRVERCEVFGKWRARMSMARFELKPLSESVAESMRARLNC-GNPGFTVKEENGGISFGWMGRTLTVASAWR 575
                  *************************************************75.55***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.53183556IPR005202Transcription factor GRAS
PfamPF035143.3E-106211575IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MTSGFSGGGT EFYGRIAGGS VSNSGTMSNN QPTAPYGTHG IFMDPKSQIV NRAAPGFVGK  60
RTRADFNNHG LNDLNPRPRY GVPVLQQLRR QQLPLGISSG ATIQAMNPGF SSAQYLNLVQ  120
ARVVQAQDPE NKMMNQLQEL EKQLLDDDNE EEGDAVSVIT NSNSEWSETI QPLISSSSPN  180
KQIATSPTSS TTSSSSSTSS VASPVSICSK QKIMEVASAI SDGKTDVLNE ILARLAQLAN  240
AKGNSEQRLT ECMLLALKSR LNSVESSPPV TELFSKEHAT ATHLLYDLSP CFKLGFMAAN  300
QAILDATLDQ PSCKKLHIID FDIGQGGQYA TLLHALSERG RGNPAMIKIT CIADNGGDER  360
LKAVGFKLSL VAERFGVRLK FNVVPSLKLS DLSRESLGCE LDEPLAVNLA FKLYRMPDES  420
VSVENPRDEL LRRVKRLAPC VVTLVEQEIN TNTAPFASRV GEAVGYYGAL FESIESTFGR  480
ENSERVKVEE GLLRKIVNSV ACEGRDRVER CEVFGKWRAR MSMARFELKP LSESVAESMR  540
ARLNCGNPGF TVKEENGGIS FGWMGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4123257526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.24890.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5907633e-32JX590763.1 Gossypium hirsutum clone NBRI_GE25751 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720276.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-174SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1U8M0D10.0A0A1U8M0D1_GOSHI; scarecrow-like protein 8
STRINGGorai.006G050200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-165SCARECROW-like 8