PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0225
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 473aa    MW: 52006.3 Da    PI: 6.2017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0225genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29194252259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs ed +++++tYeg+Hnh+
  Gh_A09G0225 194 YDGCQWRKYGQKISKGNPCPRAYYRCTVApDCPVRKQVQRSFEDMSILVTTYEGSHNHP 252
                  59**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30178254IPR003657WRKY domain
SuperFamilySSF1182902.09E-26185254IPR003657WRKY domain
PROSITE profilePS5081128.082188254IPR003657WRKY domain
SMARTSM007742.8E-35193253IPR003657WRKY domain
PfamPF031062.0E-25195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEVLLMNMAD DHAVKQEENI TQEGKVRKTV DLKLSSSSST HDELETAKEE NERLKMMLEQ  60
IQENYKSLQS RFFEIIKQES AIEEGSEEPE LVSLSLGRSS PTGSKKDDKK TTICSKTEED  120
DHNKSGLTLG LDSKFQLSTE IVSNPSHENS SKDANKVQKR PSSDEDHEEG VEQKSQVKRA  180
RVSVRTRCDA PTMYDGCQWR KYGQKISKGN PCPRAYYRCT VAPDCPVRKQ VQRSFEDMSI  240
LVTTYEGSHN HPIPVSATTM ASTTAAAASM LLSGSSTSQP ALSTEINGLN FSSSLHENSR  300
LPSYPTITLD LTASLSSSSS FNYFNRFPTN CPATPRFPST NLNFSSPLVS NESFTQEHYF  360
YQKSLTDTLT KAITSDPSFR SLISAAISSM VGHSSAKPGD GTDQRGDSFS QNLMEAAFNS  420
QSLNDSSLRG SSYFKGFESS SSRIGSSNQS SSLSFSSFNA ASTLAFDNKQ GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20180254174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384710.0KM438471.1 Gossypium aridum WRKY75 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672928.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG83e-86WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A2P5YIS50.0A0A2P5YIS5_GOSBA; Uncharacterized protein
STRINGGorai.006G025700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2488934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-76WRKY DNA-binding protein 72