PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 387aa MW: 44405.3 Da PI: 8.9064 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.7e-11 | 64 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ ++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g Gh_A09G0218 64 SRFRGVSKHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 120 789******************88887784446666.99***9**************98 PP | |||||||
2 | AP2 | 53.8 | 4.8e-17 | 163 | 214 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Gh_A09G0218 163 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAARAYDIAAIEYRG 214 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-7 | 64 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-14 | 64 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 65 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.991 | 65 | 128 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-19 | 65 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 163 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-18 | 163 | 224 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.73E-25 | 163 | 224 | No hit | No description |
PROSITE profile | PS51032 | 18.927 | 164 | 222 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 164 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-26 | 164 | 228 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-5 | 204 | 224 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEMIMVKDES YQRRRRMSSV YGDVQAVRCV KRRRRDRCDV NQGLQQNDQS RNAPAAAITV 60 KRSSRFRGVS KHRWTGRYEA HLWDKLSWNV TQKKKGKQGA YDDEEAAARA YDLAALKYWG 120 TSTSTNFPIS DYEKEIEVMQ TVSKEEFLAS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR 180 IGRVFGNKYL YLGTYNTQEE AARAYDIAAI EYRGINAVTN FDLSTYVGWL KPRMTNNYRI 240 AANETPATVE PESVQSTSCY SPIEESKPSI HYPFAADYFN SPQKQQHVVE TNLPVSYKSS 300 SPTALSLLFR SSVFRELVEK NANNVSEDES SNSDADDEQK NQQPGRSDHS DEFGRLFYDE 360 ICSGFPLFFS PTKDSIQLQE NELPFVI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 34 | RRRMSSVYGDVQAVRCVKRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673329.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2P5QFT3 | 0.0 | A0A2P5QFT3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G025100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 4e-77 | AP2 family protein |