PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0195 | ||||||||
Common Name | HB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 275aa MW: 31284.2 Da PI: 6.8482 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.9e-18 | 79 | 131 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Gh_A09G0195 79 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 131 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.2 | 3.4e-41 | 77 | 167 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLk++++alk++n++L++++++L++el Gh_A09G0195 77 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKKQFEALKADNDALQAQNKKLNAEL 167 69**************************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.46E-19 | 69 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 76 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.04E-16 | 78 | 134 | No hit | No description |
Pfam | PF00046 | 3.3E-15 | 79 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 81 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.4E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.4E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-14 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAFPPHAFMF QPHEDHHNDH LPSPTSLNFL PSCPPQLFHG GGAPFMMKRS VSFSGVDKSE 60 EVHGDDELSD DGSHLGEKKK RLNLEQVKAL EKSFELGNKL EPERKVQLAK ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD ALKKQFEALK ADNDALQAQN KKLNAELLAL KTKDSNETSC 180 IKKENDCSWS YGSDKNSCDV NLDISRTPLT SSSKHLFPPS VRPTSMTQLL QGSSRPDLQC 240 VKLDQVVQEE SFCNMFNGVD EQQAFWPWSE QQSFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18653 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00322 | DAP | Transfer from AT3G01220 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF151309 | 0.0 | EF151309.1 Gossypium hirsutum homeobox protein (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313679.1 | 0.0 | homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q8LAT0 | 3e-98 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | A9PL22 | 0.0 | A9PL22_GOSHI; Homeobox protein | ||||
STRING | Gorai.006G022100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 7e-92 | homeobox protein 20 |