PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0159
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 386aa    MW: 43356.8 Da    PI: 7.1526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0159genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.9e-53141411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLkkk+++++l++ e ik+vdiyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ + 
  Gh_A09G0159  14 MLPGFRFHPTDEELVGFYLKKKIQQRPLPI-ELIKQVDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGA 110
                  579***************************.89***************8888899***************************************9555 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfy+gra kg ktdW+mhe+rl
  Gh_A09G0159 111 KCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 141
                  66***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-5813173IPR003441NAC domain
PROSITE profilePS5100557.2814173IPR003441NAC domain
PfamPF023651.4E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDEKNDVDKV DDVMLPGFRF HPTDEELVGF YLKKKIQQRP LPIELIKQVD IYKYEPWDLP  60
KLAASGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGA KCIGLKKSLV  120
FYRGRAAKGM KTDWMMHEFR LPSMSDSIPP SKNLFDKTLP ANDAWAICRI FKKTSTMAQR  180
ALSDTWISSL NHGAACSQFS SENISCTTEI GSTIPLCSNG ELQQDCSAGF SALDIPSYKS  240
FHQTVYRPSS FHVSNGDLHN NMMFSPLDNM SGSSPKCTID TSSMLLSRPL ISNASASTDF  300
RGQQHQYGDF SISSPQDMQG NGGGVESEEG TRKTSDSIPD YNHLLMGFPF RLSPNMPDSW  360
KPNLPWDSPQ CPSEISTTYS TDKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-521617619168NO APICAL MERISTEM PROTEIN
1ut4_B8e-521617619168NO APICAL MERISTEM PROTEIN
1ut7_A8e-521617619168NO APICAL MERISTEM PROTEIN
1ut7_B8e-521617619168NO APICAL MERISTEM PROTEIN
4dul_A8e-521617619168NAC domain-containing protein 19
4dul_B8e-521617619168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472030.0KC847203.1 Gossypium hirsutum NAC domain protein NAC26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668254.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-100FEZ_ARATH; Protein FEZ
TrEMBLA0A1U8HY030.0A0A1U8HY03_GOSHI; protein FEZ-like
TrEMBLA0A2P5YET20.0A0A2P5YET2_GOSBA; Uncharacterized protein
STRINGGorai.006G017700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-98NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]