PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A09G0122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 370aa MW: 40865.3 Da PI: 4.4581 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Gh_A09G0122 43 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 92 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.80E-32 | 42 | 99 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-19 | 43 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 43 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 43 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-14 | 43 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MGRKRKVDTD MATEDETMGW DEMVKQAAAA TASLGGIRRA RKRFVGVRQR PSGRWVAEIK 60 DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PCSSSSMNST PALSSKISNR 120 LLQRIQAKNN SCFPLPTPSP PPVSVTVNAC VSQQPLLQQV EDDNNHGFLD VLEDFSISND 180 ELFNTKSVES CLTDNEDCSN SKRELDWSSP SNDDDLGDEG TLDFQFVDEI GFGPSYSCSP 240 FQLAEELESP TMAAEILADE HSMISYERKF SASLYAFNGI PELLKRKLGS EAAMAERRSE 300 QLSALRNACK NNNKRVKQDD LGTKQEESPQ SSFDSSSSMD MVEPSSSGNH DGESLWSSLD 360 LPPIIALLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 36 | 99 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670178.1 | 0.0 | PREDICTED: uncharacterized protein LOC107890193 | ||||
TrEMBL | A0A2P5WIW0 | 0.0 | A0A2P5WIW0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G013600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18279 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-22 | related to AP2 11 |