PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0075
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 374aa    MW: 41992.4 Da    PI: 5.6223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0075genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.34.9e-17215261455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Gh_A09G0075 215 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 261
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-21209277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-18214265No hitNo description
PfamPF000102.4E-14215261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-21215271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-19217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNHCSSDWNF DSDLPISNQK KLLGQDNELV ELLWQNGKVV LQSQTHKKQD DETVSWIQNP  60
FEESFEKEMF SNFFSEFPAY DPMDHQHEQQ EDDKSLKHKN NLMQREVNEL SGMAIGSSHC  120
GSNQVRNDGD LSRGSSNGIG TTSTGLSVGT SKDDEDDYNG GQVENEKGTS VGVTSSQKRK  180
NGDGREDYEC QSEFAEDKPV RRSGSYRRRS RAAEVHNLSE RRRRDRINEK MRALQELIPH  240
CNKTDKASML DEAIEYLKSL QSQLQVMWMG NGMAPMMFPG IQHYMSPMAM GTAPPTMPSI  300
QNQRFIQNPT FSEQYARFLG FQHMQTASQP INMFGYGSQT TPQSPTVLGF SNGSNQLNGG  360
ITAANNTSLS GKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206223RRRSRAAEVHNLSERRRR
2219224ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5258021e-76HQ525802.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DXEGO simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668077.10.0PREDICTED: transcription factor PIF4-like isoform X2
RefseqXP_016668078.10.0PREDICTED: transcription factor PIF4-like isoform X3
TrEMBLA0A1U8HPW90.0A0A1U8HPW9_GOSHI; transcription factor PIF4-like isoform X2
TrEMBLA0A1U8HVV30.0A0A1U8HVV3_GOSHI; transcription factor PIF4-like isoform X3
STRINGGorai.006G008800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-53phytochrome interacting factor 4