PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G2527

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 494aa MW: 55619 Da PI: 9.7209

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G2527	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	18	73	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gh_A08G2527 18 KKRTVKTPAQVMALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 73 8*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-18	6	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.856	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-16	15	74	IPR009057	Homeodomain-like
SMART	SM00389	2.9E-14	16	78	IPR001356	Homeobox domain
Pfam	PF00046	8.6E-16	18	73	IPR001356	Homeobox domain
CDD	cd00086	2.18E-15	18	74	No hit	No description
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MEGEVQTEEN KVSLDVNKKR TVKTPAQVMA LEKFYKELRF PSDEMKAQIA LQVGLTEKQI 60 SSWFCHRRLK DKKRDEYVNR RLDHSSGIIQ DRGSGLRQDS SGSIKERDYR NIDLREVESG 120 RISSQEFLAT DHVYDRRNHQ NPYDACMEDT SSESSSSLQD MRFSENRGPY ETKLGQNGTI 180 TQINPRTTKN TVFKPSGYLK LKGESENPAI LAVKRQLGRY YIEDGPLLAT DFDSLPNGAF 240 EFPSSKAVSE PVDVGDHPQQ PRSPRISGAM KQPNPNVVNE VHNSKTSSQD PYMENATFKP 300 VYGLERQNKK SRHQLYKSHF NSFPGQNSSS DIHRSLAENA GTINCKRSKV SSKLAVERMR 360 PDSFTNHPGP SVGKLVNEQE KTCLHDDDNR TYKAPKNKIP SKTSNSKRGC IECPGARMAK 420 VEKLGGQRRP KKEHPVGVKT DPTNESRVAK QVNVDFPRPR SPLSMNPTKS YRPSMDVPSS 480 FSEDETADTS SSSG

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MEGEVQTEEN KVSLDVNKKR TVKTPAQVMA LEKFYKELRF PSDEMKAQIA LQVGLTEKQI  60
SSWFCHRRLK DKKRDEYVNR RLDHSSGIIQ DRGSGLRQDS SGSIKERDYR NIDLREVESG  120
RISSQEFLAT DHVYDRRNHQ NPYDACMEDT SSESSSSLQD MRFSENRGPY ETKLGQNGTI  180
TQINPRTTKN TVFKPSGYLK LKGESENPAI LAVKRQLGRY YIEDGPLLAT DFDSLPNGAF  240
EFPSSKAVSE PVDVGDHPQQ PRSPRISGAM KQPNPNVVNE VHNSKTSSQD PYMENATFKP  300
VYGLERQNKK SRHQLYKSHF NSFPGQNSSS DIHRSLAENA GTINCKRSKV SSKLAVERMR  360
PDSFTNHPGP SVGKLVNEQE KTCLHDDDNR TYKAPKNKIP SKTSNSKRGC IECPGARMAK  420
VEKLGGQRRP KKEHPVGVKT DPTNESRVAK QVNVDFPRPR SPLSMNPTKS YRPSMDVPSS  480
FSEDETADTS SSSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	74	RRLKDKKRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4147	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016727011.1	0.0	PREDICTED: uncharacterized protein LOC107938390 isoform X2
TrEMBL	A0A1U8MJK5	0.0	A0A1U8MJK5_GOSHI; uncharacterized protein LOC107938390 isoform X2
STRING	Gorai.004G014700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28239	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-59	HB-other family protein