PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2486
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 255aa    MW: 28439.8 Da    PI: 6.4003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2486genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-10168211755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Gh_A08G2486 168 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 211
                  6779*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-12159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12159215No hitNo description
PROSITE profilePS5088815.408161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MALAKDPICS VQTSILLEDG SDGFIFQAVH YQPEQPHSLI NFKDSGYDNF IHSTNGSLLS  60
FEQNEKGRQH TTCLRTSGYK HGHSMVDQWD PRAVEDFSCF ETASNGDWLY YDEAVFADSS  120
SIQDPGSPAA DLKRPHMGGS NQALKKQCTN ETKKGKTKSE PSKEPQSIAA KNRRERISER  180
LKILQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLATD EFWPVQGGKA PDISQVREAI  240
DAILSSQKQR NSTSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744553.10.0PREDICTED: transcription factor bHLH83-like
SwissprotQ9FJ005e-60BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A1U8P2G90.0A0A1U8P2G9_GOSHI; transcription factor bHLH83-like
STRINGGorai.004G064400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-62RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  3. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]