PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2417
Common NameWRKY41
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 355aa    MW: 40062.6 Da    PI: 5.4266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2417genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.4e-29130190259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++e+tY+g H++ 
  Gh_A08G2417 130 DDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTLFEVTYRGIHTCA 190
                  8***************************98899*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28123190IPR003657WRKY domain
SuperFamilySSF1182904.97E-26128190IPR003657WRKY domain
SMARTSM007741.0E-40129191IPR003657WRKY domain
PfamPF031061.6E-26130189IPR003657WRKY domain
PROSITE profilePS5081122.022130197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MENMWKWEQG TLVSELIQGM QLAKQLRLHL GASSSSVESR DLLLQKILSS YEKALLILKL  60
SRPTEQPQQN VGGITCVPES PLTINGSPRS DDLEKDNQDI RDVSKKRKMM PRWTDQVRVS  120
SENLLEGPHD DGYSWRKYGQ KDILGAKYPR SYYRCTYRNT QNCWATKQVQ RSDEDPTLFE  180
VTYRGIHTCA NGNHAVPSPE KQHKSNTNGL NNTNYQPLQS QDVLSEFRAG LRVNIEGLDN  240
KEMAPPFSFA STSFGCIKSE NHSFSPSGVL DYNNIFGSFS SPFMSPDTPE LNYFSISQMN  300
NFQGVLNTQH SKSDLTELVS ANTSATNSPI MDLDFSLDQV ELDPNFPFDT PGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19130189968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.11320.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1830630.0KJ183063.1 Gossypium hirsutum WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314220.10.0probable WRKY transcription factor 41
TrEMBLA0A0U1XEA00.0A0A0U1XEA0_GOSHI; WRKY transcription factor 27a
STRINGGorai.004G134600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-75WRKY family protein