PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G2049
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 317aa    MW: 35752.1 Da    PI: 6.1095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G2049genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W + Ed++l+  ++++G  +W++ ++  g+ R++k+c++rw +yl
      Gh_A08G2049 16 RGPWNPSEDLRLITFIQKHGHQNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding45.81.4e-1469114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      Gh_A08G2049  69 RGNFAKDEEDTIIRLHATLGNK-WSKIASYLP-GRTDNEIKNVWNTHL 114
                      89999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-23765IPR009057Homeodomain-like
PROSITE profilePS5129415.3821163IPR017930Myb domain
SuperFamilySSF466893.71E-2814110IPR009057Homeodomain-like
SMARTSM007175.4E-121565IPR001005SANT/Myb domain
PfamPF002494.3E-141663IPR001005SANT/Myb domain
CDDcd001675.89E-91863No hitNo description
PROSITE profilePS5129423.55564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2566118IPR009057Homeodomain-like
SMARTSM007173.5E-1368116IPR001005SANT/Myb domain
PfamPF002498.4E-1469114IPR001005SANT/Myb domain
CDDcd001674.94E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGKGRAPCCD KEKVKRGPWN PSEDLRLITF IQKHGHQNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFAKDEEDTI IRLHATLGNK WSKIASYLPG RTDNEIKNVW NTHLKKRLSS  120
MNGNVDKKYE SMATLSSSSC VTSMSSFNAK KPNEAFEMAV VSDKANHGSP SEEPEALSSS  180
SISSNVSNSN QVNVSNPEIQ QGPLFNFTGC YYNTSEEVNK PETTFDIPLE SDLEFWNMLD  240
SLVPFQPEGI QSHNETQCPD FGEAENKWLL YLEQELGLDP KDGGFEAEPL LVPEMNGMGT  300
MCHYHNTVQP YEPNSKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-26161184105C-Myb DNA-Binding Domain
1msf_C9e-26161184105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591541e-70AJ459154.1 Gossypium hirsutum partial myb125 gene, clone pGhMYB125.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692092.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U8JP990.0A0A1U8JP99_GOSHI; myb-related protein Myb4-like
STRINGGorai.004G269400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.19e-77myb domain protein 58