PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1974
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 511aa    MW: 58763.9 Da    PI: 10.32
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1974genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14221031399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++ l lpk+f++ +g +   s t++++ ++g +W+v+l   k++g+++l++GWk+F++   Lk g  ++F+++g+s+f +v+++f++
  Gh_A08G1974  22 TQKLPLPKRFVSLYGDD--LSNTVIVKAPTGPEWKVEL--MKCDGEIWLANGWKDFADYFSLKYGNLLIFRYEGHSRF-YVFMIFDQ 103
                  45689******999988..889****************..*********************************99999.99999986 PP
2B354.91.6e-17211307199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff v +++++ +  r  +p +fa+++     ++ +++l+d++gr+W + l++ +k   + +++GWk F+ +n+L++gD++ F+l +  e +++v+vfr
  Gh_A08G1974 211 FFVVNIQPSYITAFRANVPFTFARTYFTW--KEADVVLKDRDGRTWPIHLKVYNKYHCTSFGRGWKAFAIDNDLRVGDSCAFELLEGPEISFRVTVFR 306
                  788999999999**************744..4558***************87555556789**********************9988888899*9999 PP

                  S CS
           B3  99 k 99 
                  +
  Gh_A08G1974 307 N 307
                  7 PP
3B357.32.8e-18413505298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fkv ++ + l++g  ++p +f++eh+++   + ++tl+  + +sW+v++i+ + + g   ++ GW+ Fv+ n+Lk+gD++vFk++++++  + v++fr
  Gh_A08G1974 413 FKVIITTNFLQRGFPSIPERFCDEHMEQ--IPEDVTLKY-KHKSWRVRMIIcSDRAG--RFSIGWRAFVQGNKLKVGDVCVFKMIKKTNIVFEVSIFR 505
                  799999999****99**********866..555688776.779******77433333..47889*******************998877777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-17899IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-191099IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.04210103IPR003340B3 DNA binding domain
CDDcd100175.41E-1313102No hitNo description
SMARTSM010191.5E-1114104IPR003340B3 DNA binding domain
PfamPF023629.2E-1221103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-23205306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-22205307IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-19210306No hitNo description
PfamPF023624.9E-15211307IPR003340B3 DNA binding domain
PROSITE profilePS5086314.156211308IPR003340B3 DNA binding domain
SMARTSM010191.6E-15211308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-22405505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-19408505IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.69412507IPR003340B3 DNA binding domain
SMARTSM010191.0E-15412507IPR003340B3 DNA binding domain
CDDcd100173.28E-18412505No hitNo description
PfamPF023621.5E-15413505IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MFTSSMNHPK ALHFFRIILS QTQKLPLPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC  60
DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTLEIEY PNGIDNHEVE  120
LQIPDVEEVG SEDVVEIVNN VSRSRKTTEK TRSSPRKRTR MQGATNAKKS EFRMSSRDGS  180
KIGPEQAGGG TSAAQRSSAS SANHFGSEKP FFVVNIQPSY ITAFRANVPF TFARTYFTWK  240
EADVVLKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF ELLEGPEISF  300
RVTVFRNPED SNDRHTSTRG SKIGHGRHKR ELNARIQTEY DHSSENETIR YSKRNKESHV  360
PRRKIKNGDG KFDEAMQNKT SARRAIQRLP RKGTAIARAL ERVSKLRSAH PLFKVIITTN  420
FLQRGFPSIP ERFCDEHMEQ IPEDVTLKYK HKSWRVRMII CSDRAGRFSI GWRAFVQGNK  480
LKVGDVCVFK MIKKTNIVFE VSIFRDGLTL G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715103.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U8LNQ80.0A0A1U8LNQ8_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.004G260200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-26B3 family protein