PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1880
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 331aa    MW: 37202.8 Da    PI: 7.3429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1880genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13122173155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_A08G1880 122 QRMTHIAVERNRRKQMNDYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 173
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-13120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-13120177No hitNo description
SuperFamilySSF474591.09E-16121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEAVIFQQ DLLGYNSNWS HDFGLGKPES KDSFGCFPDT QTPEINHFVH GDYWVSTTPT  60
SSMAAPVPHH HQLQHHCPNS SSDAANVNGL SSSGDPFDAS TTPRPKRRRF KTRKNKQEIE  120
NQRMTHIAVE RNRRKQMNDY LSVLRSLMPE SYVQRGDQAS IIGGAINFVK ELEHRLQCLS  180
AEKEVKERSN LTNGGRRSCS SVFDEFFTFP QYSTSSKQGD RKDSISMNDQ STVETQSAIA  240
DIEVNMVESH VNLRIRSKKR PAQLLKVVCG LNCMRLSILH LNVTTLDQTV LYSLSVKVEE  300
DCKLTSVDDI ATAVNQLLGS IEDALLTRNF P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122133RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675266.10.0PREDICTED: transcription factor bHLH94-like isoform X1
RefseqXP_017624415.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A0B0PH060.0A0A0B0PH06_GOSAR; Transcription factor bHLH96-like protein
TrEMBLA0A1U8IAK70.0A0A1U8IAK7_GOSHI; transcription factor bHLH94-like isoform X1
STRINGGorai.004G243100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-76bHLH family protein