PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 261aa    MW: 28879.6 Da    PI: 6.2277
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1872genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.81e-55811841101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi
  Gh_A08G1872  81 QLQAFWANQyqeIEKVTDFKNHNLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 178
                  89******99999************************************************************************************* PP

        NF-YC  96 vprdel 101
                  vpr++l
  Gh_A08G1872 179 VPREDL 184
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-3373175IPR009072Histone-fold
PfamPF008082.4E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-37104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDQQGHGQPP AMGMMGSGGQ VPYGTNPYQN QVTGTAPNPG SVVTSVGGIQ STGQPTGAQL  60
AQHQLAYQQI HHQQQQQLQQ QLQAFWANQY QEIEKVTDFK NHNLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGTMPVG GPADALSYYM PAQHAPQVGT PGMIMGKPVV DPAIYAQQSH  240
PYMAQQMWPP GPEQQQSSSD H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-6289181395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.109251e-153ovule| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476602.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012476603.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012476604.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012476605.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_012476606.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016675186.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016675191.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016675193.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016675199.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016680221.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016680222.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016680223.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016680224.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_016680225.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_017624013.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_017624014.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_017624015.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_017624017.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
RefseqXP_017624018.10.0PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B26e-90NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A0B0N3J40.0A0A0B0N3J4_GOSAR; Nuclear transcription factor Y subunit C-9-like protein
TrEMBLA0A0D2N3110.0A0A0D2N311_GOSRA; Uncharacterized protein
TrEMBLA0A1U8IQ190.0A0A1U8IQ19_GOSHI; nuclear transcription factor Y subunit C-9-like
STRINGGorai.004G242200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-86nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Gnesutta N, et al.
    CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer.
    Plant Cell, 2017. 29(6): p. 1516-1532
    [PMID:28526714]
  7. Bi C,Ma Y,Wang XF,Zhang DP
    Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Plant Mol. Biol., 2017. 95(4-5): p. 425-439
    [PMID:28924726]
  8. Liu X, et al.
    Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    Plant Physiol., 2018. 177(1): p. 105-114
    [PMID:29599268]