PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 28879.6 Da PI: 6.2277 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.8 | 1e-55 | 81 | 184 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi Gh_A08G1872 81 QLQAFWANQyqeIEKVTDFKNHNLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 178 89******99999************************************************************************************* PP NF-YC 96 vprdel 101 vpr++l Gh_A08G1872 179 VPREDL 184 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.71E-33 | 73 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 103 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 104 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDQQGHGQPP AMGMMGSGGQ VPYGTNPYQN QVTGTAPNPG SVVTSVGGIQ STGQPTGAQL 60 AQHQLAYQQI HHQQQQQLQQ QLQAFWANQY QEIEKVTDFK NHNLPLARIK KIMKADEDVR 120 MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 REDLKDEVLA SIPRGTMPVG GPADALSYYM PAQHAPQVGT PGMIMGKPVV DPAIYAQQSH 240 PYMAQQMWPP GPEQQQSSSD H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-62 | 89 | 181 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10925 | 1e-153 | ovule| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476602.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012476603.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012476604.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012476605.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_012476606.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016675186.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016675191.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016675193.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016675199.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016680221.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016680222.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016680223.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016680224.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_016680225.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_017624013.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_017624014.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_017624015.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_017624017.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_017624018.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 6e-90 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0B0N3J4 | 0.0 | A0A0B0N3J4_GOSAR; Nuclear transcription factor Y subunit C-9-like protein | ||||
TrEMBL | A0A0D2N311 | 0.0 | A0A0D2N311_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8IQ19 | 0.0 | A0A1U8IQ19_GOSHI; nuclear transcription factor Y subunit C-9-like | ||||
STRING | Gorai.004G242200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-86 | nuclear factor Y, subunit C9 |