PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35809.9 Da PI: 7.7259 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl Gh_A08G1781 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + ++++ G++ W+ Ia+ ++ gRt++++k++w++ Gh_A08G1781 69 GEFSEEEDMVICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.175 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.021 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.51E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGRAPCCDKA SVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDMVIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL 120 SSQPQRKPPP LPIPSSHQTI PPSYKDCSSY YYTPSSRSFA GFEPSSTVQS DILNHNNTFL 180 ATDSSLNHNT PDSFVSYYPV KEKFLMFASE PSCSSSDGSS YGKEIKQEDM SNFQGFCAPN 240 GYEDNHKFML SYGNRNQWTE KPSGHHGETP LDYDLEDVKR LMDSSSSNNS CNNNNNNHLL 300 IDESKSQEKV MYYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM052723 | 0.0 | KM052723.1 Gossypium hirsutum RAX-like transcription factor RAX4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017625656.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A2P5X485 | 0.0 | A0A2P5X485_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G231100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 3e-76 | myb domain protein 68 |