PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1612
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 174aa    MW: 18698.1 Da    PI: 5.2864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1612genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-151361255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r++  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++  +++l+g
  Gh_A08G1612 13 LYHGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVGALALKG 61
                 699**854..6*********843...5********************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.67E-261271No hitNo description
PfamPF008473.1E-91261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-251370IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-171371IPR016177DNA-binding domain
PROSITE profilePS5103219.1371369IPR001471AP2/ERF domain
SMARTSM003802.2E-241375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASASSPSGK HPLYHGIRRR SGKWVSEIRE PRKTTRIWLG TYPTPEMAAA AYDVGALALK  60
GAEAFVNFPA SVASYPLPAS ILSADIRKAA AAAALLKKAE SKGIEIDLGS GHPHPAKKEE  120
MTSTEEYMDE DVFLNLPNLL VDMAEGLLVS PPRLSSTPSD DSPENSDGES LWSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713385.11e-123PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ904e-53ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8LFP11e-122A0A1U8LFP1_GOSHI; ethylene-responsive transcription factor ERF026-like
STRINGGorai.004G208000.11e-101(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-50ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]