PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 299aa MW: 33670 Da PI: 6.6519 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.8e-08 | 248 | 281 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Gh_A08G1599 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281 469*****************************87 PP | |||||||
2 | ELK | 25.5 | 3.1e-09 | 202 | 223 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Gh_A08G1599 202 ELKIELKQGFKSRIEDVREEIL 223 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.2E-19 | 34 | 78 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.3E-17 | 36 | 77 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.0E-22 | 91 | 146 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.8E-16 | 94 | 145 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 202 | 222 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 222 | 285 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-16 | 224 | 289 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 224 | 289 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.73E-11 | 225 | 286 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 229 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 242 | 281 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MQEPGLAMMS SGGGSGGIGG LSSGEVSVSG EQNRQLKAEI AVHPLYEQLL AAHVSCLRVA 60 TPIDQLPLID AQLAQSHNLL RSYASQHQHG HSLSPHERQE LDNFLAQYLI VLCTFKEQLQ 120 QHVRVHAVEV VMACREIENN LQALTGVTLG EGTGATMSDD EDDMQMDFSL DQSGTDGHDL 180 MGFGPLIPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK 240 NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 225 | 281 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 298 | RKRNWHSNSQSVTSLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.5994 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC200250 | 0.0 | KC200250.1 Gossypium hirsutum KNOX protein (KNL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016713423.1 | 0.0 | PREDICTED: homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 1e-173 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A1U8LJ13 | 0.0 | A0A1U8LJ13_GOSHI; homeobox protein HD1-like | ||||
STRING | Gorai.004G206600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-171 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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