PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1540
Common NameWRKY28
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 292aa    MW: 32661.7 Da    PI: 9.9989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1540genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31223280359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+ver+ edp+++++tYeg+H+h+
  Gh_A08G1540 223 DDHSWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERCLEDPSMLVVTYEGDHKHS 280
                  99************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.6E-17182219IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32209281IPR003657WRKY domain
PROSITE profilePS5081129.126216282IPR003657WRKY domain
SuperFamilySSF1182901.7E-26218280IPR003657WRKY domain
SMARTSM007742.3E-36221281IPR003657WRKY domain
PfamPF031061.6E-26223279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNPRWDLKVH EVAESSFRRA NHLFSCICDG SQKRSNQEIS LMAQDTVNGF RKLLSLLDGS  60
MQSECKRIRK GPLPKSHNVN PAELMDSPSF ASQSSICKPS QPHILGQFVS PQFNQSNTGL  120
IPRNVVVLPN LIMGLQHSST LPTMMPMFDK KLIPWSSSEI VVPQDESCML LSKRKIGVGS  180
EEASTKCAAS TGGCHCSKRR KLRIKKTIRV PAISNKPSDI PPDDHSWRKY GQKPIKGSPY  240
PRSYYKCSST RGCPARKHVE RCLEDPSMLV VTYEGDHKHS RITCQFPSNV IV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202192791271WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697960.0KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625533.10.0PREDICTED: probable WRKY transcription factor 15 isoform X1
TrEMBLA0A068LEN70.0A0A068LEN7_GOSHI; WRKY transcription factor 28
TrEMBLA0A1U8JHP50.0A0A1U8JHP5_GOSHI; probable WRKY transcription factor 15
TrEMBLA0A2P5XXA80.0A0A2P5XXA8_GOSBA; Uncharacterized protein
STRINGGorai.004G199500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2013656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-46WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]