PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1516
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23536.6 Da    PI: 6.6928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1516genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-184493255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Gh_A08G1516 44 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 93
                 69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.43344101IPR001471AP2/ERF domain
SMARTSM003805.4E-3744107IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2244102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-3244102IPR001471AP2/ERF domain
PfamPF008472.1E-124493IPR001471AP2/ERF domain
CDDcd000186.91E-3345103No hitNo description
PRINTSPR003677.9E-114556IPR001471AP2/ERF domain
PRINTSPR003677.9E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEVPLDVESK TPFPSSSSSP PPGFKSRKLK IGSESKGKDG KHPTYRGVRM RQWGKWVSEI  60
REPRKKSRIW LGTFPTAEMA ARAHDVAALT IKGNSAYLNF PELAHQLPRP VSASPKDIQA  120
AAAKAATLTY TKSHDVEDDP MLPRSPTTTA TSQEESHLII DDEAFIDLPD LLLDMNLQID  180
KFWSSVSWKL DDAVETGFGG EEPRASNFIF LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1835101572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.191561e-161boll
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721907.11e-154PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP39e-56ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A1U8M5171e-153A0A1U8M517_GOSHI; ethylene-responsive transcription factor ERF039-like
STRINGGorai.004G196700.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]