PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1474

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 340aa MW: 37920 Da PI: 7.9857

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1474	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4.1e-16	19	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+k+e l+Liea++e++ +lr ++lk+ +W +vs+++ + +s++q ++k+e+l++r++++k+++ k+ + ss++ +f l+ Gh_A08G1474 19 CWSKEESLVLIEAYKEKWFALRCQNLKASDWGAVSAAVssaSGPETMKSSVQYRHKIEKLRQRFRAEKQRSLKNPGKFSSSWDLFPLLD 107 7***********************************7544445689*********************99999****98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-16	18	107	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MATPQSCSAT ATQRVAPPCW SKEESLVLIE AYKEKWFALR CQNLKASDWG AVSAAVSSAS 60 GPETMKSSVQ YRHKIEKLRQ RFRAEKQRSL KNPGKFSSSW DLFPLLDCMN FVPLSVNGSA 120 DQDNLYYNKD GGFYWKLKNH ENIYGNSGSD LGFDHCLSGG FSQGIDSVGL GKAPLKTLGD 180 KSCMNLGFKP KNHGSSNLNY DYDNDLQEYV DEGMGFQAKV SDAWDSVPRG FHQKKCGVVD 240 RSFNPGVDDY RGLNGFASCS SPELGVKNGN GGVKRGMDPV EEMVSSIKLL AEGFVRMEKM 300 KIEMVKDIEK TRMKMEMKHN EMTLESRQKI MDVFANALLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704149.1	0.0	PREDICTED: uncharacterized protein LOC107919134
TrEMBL	A0A1U8KTU6	0.0	A0A1U8KTU6_GOSHI; uncharacterized protein LOC107919134
STRING	EOY24171	1e-151	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-20	Trihelix family protein