PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1242

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 254aa MW: 28029.7 Da PI: 5.0209

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1242	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.9e-18	87	135	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Gh_A08G1242 87 FRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 135 89*998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.958	86	143	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.7E-31	86	144	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-21	86	143	IPR016177	DNA-binding domain
SMART	SM00380	2.4E-37	86	149	IPR001471	AP2/ERF domain
CDD	cd00018	9.21E-32	87	144	No hit	No description
PRINTS	PR00367	6.5E-10	87	98	IPR001471	AP2/ERF domain
Pfam	PF00847	3.6E-12	87	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.5E-10	109	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEFGRDINIE NDASHCHNDL LSSYSIVSYT ATPTSSTCSS SSTSGCHPNG VAEKRLKKGG 60 DMENDDNENK KRQRSTCGNN DSKHGTFRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE 120 MAARAHDVAA LAIKGPSAYL NFPEIAKQLP RPATTSPKDI QAAASQAAAS TFLDTRQCNV 180 ENEAGVSHEE LHNTQESSSS PSIDDDDTLF DLPDLIIDTA DRNDGFCSYS SSAWQICAVD 240 AGFRIEEPFS WDYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	82	143	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24416	1e-157	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716620.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF034-like
Swissprot	Q8LBQ7	2e-63	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1U8LPZ1	0.0	A0A1U8LPZ1_GOSHI; ethylene-responsive transcription factor ERF034-like
STRING	Gorai.004G165300.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	5e-46	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]