PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1186
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 344aa    MW: 37755.4 Da    PI: 9.5677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1186genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-1473117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E+e++++a +++  + Wk+I + +g  +t  q++s+ qky
      Gh_A08G1186  73 RESWTEQEHEKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 117
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1767123IPR009057Homeodomain-like
PROSITE profilePS5129415.8868122IPR017930Myb domain
TIGRFAMsTIGR015572.6E-1871120IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.0E-771123IPR009057Homeodomain-like
SMARTSM007172.4E-1172120IPR001005SANT/Myb domain
PfamPF002491.7E-1173117IPR001005SANT/Myb domain
CDDcd001678.15E-975118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPMNM GLPGVNSAPP ANKVAPPLHV PPPPATSGAG NTTVYPEDPS  60
KKIRKPYTIT KSRESWTEQE HEKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK  120
VQKNGTSEHV PPPRPKRKAA HPYPQKAPKT ASVVPQVAGP YQSSSALHEP GYTYRRDSSS  180
TPGNPVATAS LSSWSYNSVP PVTVSQVTKD DAVLAGPTIV HNSCYSSSSE STPRTWSFGE  240
TIDRGDHWKQ SRVLPDFAEV YSFIGSVFDP GTSGHLQKLK QMDPINLETV LLLMRNLSVN  300
LASPDFEDHR RLLSTYDAGS EGIKLGSPYN DVHTRKSASA VPTA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.145190.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623940.10.0PREDICTED: protein REVEILLE 5-like isoform X1
SwissprotC0SVG51e-110RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A1U8MUU70.0A0A1U8MUU7_GOSHI; protein REVEILLE 5-like
STRINGGorai.004G159700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-95MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]