PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | BES1 | ||||||||
Protein Properties | Length: 703aa MW: 79077.3 Da PI: 5.5152 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 145.8 | 3.7e-45 | 77 | 217 | 1 | 133 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssas..aspess 93 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ +++ + ss+s +s++ + Gh_A08G1175 77 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQSSpaaGTSAGMTSSSSqmVSQQIP 174 6899*****************************************************************95444443343333333333322333332 PP DUF822 94 lq...sslkssalaspvesysaspksssfpspssldsislasa 133 ++ +ss ++ ve ++++ks+ +p ps +d s+a a Gh_A08G1175 175 PPpatLQRVSSGYRTTVEYNACRMKSVFMPTPSPYDLSSTAPA 217 2221245679999**********************99877644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.2E-39 | 79 | 218 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 5.39E-182 | 261 | 700 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 3.7E-201 | 264 | 698 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 6.4E-104 | 269 | 689 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 300 | 314 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 321 | 339 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 343 | 364 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 347 | 355 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 5.7E-8 | 426 | 435 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.5E-68 | 436 | 458 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 509 | 528 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 543 | 559 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 560 | 571 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.5E-68 | 578 | 601 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 5.7E-8 | 581 | 591 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.5E-68 | 618 | 640 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 5.7E-8 | 669 | 683 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 5.7E-8 | 684 | 698 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MATSMQKLVG VSEEDDEEEM EMDVKEEDDE DEENGEKQIA AQMMIGVDEV MPSTSSSDQF 60 QYQPQLQEQV SNQSGGGGAR RSRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR 120 ADINDVIAAL AREAGWVVLP DGTTFPSRSQ SSPAAGTSAG MTSSSSQMVS QQIPPPPATL 180 QRVSSGYRTT VEYNACRMKS VFMPTPSPYD LSSTAPAQSS GVVADGGEQT ERLPLIAGSL 240 QVINDKQIIG LPTKLPERDF AGTPFVPVYV MLPLGVINMK CELADPDGLL KQLRVLKSIN 300 VDGVMVDCWW GIVEAHAPQE YNWNGYQRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP 360 LPHWVAEIGR SNPEIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD YMRSFRVEFD 420 EFFEDGIISM VEVGLGPCGE LRYPSCPVKH GWRYPGIGEF QCHDQYMLKS LRKAAEMRGH 480 SFWARGPDNA GSYNSQPHET GFFCDGGDYD GYYGRFFLNW YSQVLLNHGD RVLSLAKLAF 540 DGTCITAKLP GIHWWYKTAS HAAELTAGYY NPCNRDGYTA IATMLQKHGA ALSFSCAEHH 600 ILEQQDHLRE ALADPRGLVW QVLNAAWDVC IPIASENAFL CHDRVGYNKI LDNVKPVNDP 660 DGRHFSSFTY HRLSPLLMER QNFMEFERFV KRMHGEAVLD PQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdr_A | 1e-152 | 265 | 696 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442256 | 5e-56 | AM442256.2 Vitis vinifera contig VV78X202994.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016722201.1 | 0.0 | PREDICTED: beta-amylase 7-like | ||||
Refseq | XP_016722202.1 | 0.0 | PREDICTED: beta-amylase 7-like | ||||
Refseq | XP_016722203.1 | 0.0 | PREDICTED: beta-amylase 7-like | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A1U8M5V2 | 0.0 | A0A1U8M5V2_GOSHI; Beta-amylase | ||||
STRING | Gorai.004G158600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Publications ? help Back to Top | |||
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