PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A08G1141

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 198aa MW: 22354.4 Da PI: 9.1427

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A08G1141	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.2	1.5e-32	119	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Gh_A08G1141 119 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDNSIVVTTYEGIHNHP 177 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-33	105	177	IPR003657	WRKY domain
SuperFamily	SSF118290	1.22E-28	112	178	IPR003657	WRKY domain
PROSITE profile	PS50811	28.828	114	179	IPR003657	WRKY domain
SMART	SM00774	8.0E-38	119	178	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	120	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDGQELISTP PPAAPSPLTA PFLFAPSTTP SSSLHPLPPL ESQIIPDIDW VSLLYGQALL 60 LQGHDESKPV TEAASSLMAE NGGCHQIENG NQDKRKGNRF KKTTRPRFAF QTRSADDILD 120 DGYRWRKYGQ KAVKNSNYPR SYYRCTHHTC NVKKQVQRLS KDNSIVVTTY EGIHNHPCEK 180 LMETLTPLLK QMQFLARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	109	176	7	74	Probable WRKY transcription factor 4
2lex_A	2e-24	109	176	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031103	0.0	KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673402.1	1e-148	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8GY11	2e-54	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A1U8I5D6	1e-147	A0A1U8I5D6_GOSHI; probable WRKY transcription factor 43
STRING	Gorai.004G155100.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-56	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]