PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G1091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 476aa MW: 53169.9 Da PI: 6.8655 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.6e-12 | 296 | 341 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Gh_A08G1091 296 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 341 699***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.7E-51 | 26 | 194 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.475 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.13E-13 | 295 | 346 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-17 | 295 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-10 | 296 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 296 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-15 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEELIISPSS SSSLVSFSHE TPTSTLQQRL QHVLEIQKDW WAYAIFWQTS NDDLGRLLLA 60 WGDGHFQGTN KSPKPGANHF QGERRKVMKG IQALIGDNHD IDMGEAEWFY MISLTRCFSA 120 GDGIPGKCLT TGSLVWLTGA HELQFYNCER AKEAQLHGIE TLVCIPTSCG VLELGSSEII 180 RENWGLVQQV KYLFGSDLIR LLPKQSSPNQ FLDRNISFSD MGVIAGVQEQ EHASLGFKTK 240 KDCPKHGELS FVNSDHSDSE CRFRAATESN SNSNTEKRIP KKRGRKPGSG RETLLNHVEA 300 ERQRREKLNH RFYALRAVVP NVSRMDKASL LSDAVAYINE LKSKIEDLQS ELGRDHKKVK 360 IETVDGMDNQ STTTSVEQAA KPSSNSSSGN AGSNGFELDI KIIGNDAMIR VQSENVNHPA 420 ARLMDALRNL EFRVHHASMS CVNDLMIQDV VVSFTENGFR LHEQGLKSAI LTRLDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-34 | 25 | 194 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-34 | 25 | 194 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-34 | 25 | 194 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-34 | 25 | 194 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12496 | 0.0 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109869316 | 0.0 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016723218.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A1U8MCB3 | 0.0 | A0A1U8MCB3_GOSHI; transcription factor MYC2-like | ||||
STRING | Gorai.004G149500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 2e-87 | bHLH family protein |