PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1022
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 150aa    MW: 16814 Da    PI: 6.5292
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1022genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.81.8e-5436131297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+eas+kc++ekrkt+ngdd++walatlGf++y+e+lk yl++yre ege+
  Gh_A08G1022  36 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDVCWALATLGFDNYAEQLKRYLHRYREQEGER 131
                  89*******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5333142IPR009072Histone-fold
SuperFamilySSF471138.69E-4038143IPR009072Histone-fold
PfamPF008086.3E-2841105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.8E-206987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.8E-2088106No hitNo description
PRINTSPR006158.8E-20107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MADKIGINNL DSEGLKYNFA TGAASSVLSG EDGIIKEQDR LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASEKCHK EKRKTVNGDD VCWALATLGF DNYAEQLKRY  120
LHRYREQEGE RVSQNRAIER SDSSLATRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4635126192Transcription factor HapC (Eurofung)
4g92_B8e-4635126192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713308.11e-109PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822487e-60NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U8LIP91e-108A0A1U8LIP9_GOSHI; nuclear transcription factor Y subunit B-5-like
STRINGGorai.004G141600.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-62nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]