PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G1015
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 368aa    MW: 41560.6 Da    PI: 5.8498
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G1015genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.3e-071153339
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  r C+ +++  + l+C+ ++  lC +C  e H+       H++
  Gh_A08G1015 11 RRLCDYCNQSTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 53
                 689******99*********************65677777765 PP
2zf-B_box24.45.9e-085593440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                   C+ ++e +++lfCe+ q+ +C +C  e H +   H ++
  Gh_A08G1015 55 LLCDACNESPASLFCETEQSVFCSNCDWERH-ScslHHRR 93
                 68****************************9.55886655 PP
3CCT62.71.1e-21310352143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  Re a++RYkeK+ktR+++K++rYesRKa+AesR R+KGrF+k+
  Gh_A08G1015 310 RETAISRYKEKKKTRRYDKHVRYESRKARAESRTRIKGRFAKN 352
                  99***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.523956IPR000315B-box-type zinc finger
SMARTSM003368.4E-14956IPR000315B-box-type zinc finger
PfamPF006438.7E-61153IPR000315B-box-type zinc finger
CDDcd000213.55E-61256No hitNo description
PROSITE profilePS5011910.2965295IPR000315B-box-type zinc finger
PfamPF006431.3E-55593IPR000315B-box-type zinc finger
CDDcd000215.69E-85695No hitNo description
SMARTSM003360.735795IPR000315B-box-type zinc finger
PROSITE profilePS5101715.071310352IPR010402CCT domain
PfamPF062033.3E-16310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSDESHTQIQ RRLCDYCNQS TALLYCRADS AKLCFSCDRE VHSANQLFTK HSRSLLCDAC  60
NESPASLFCE TEQSVFCSNC DWERHSCSLH HRRPVEVFTG CPSVSELLSF LGIEDLGNDK  120
ASCWSEEDDG FLDFLIWECP LISGFDGVIV PNDMDHGFKA TDVPPLPKNR NSSCGQHKEE  180
IFHQLHELAK SDPTLTFQKT DLQSLIPETD HFQAASMQTS CKNDAVPVPC PALETSPLQC  240
LKFNNNVEIT NQALLYTEEN ARVANTHVDC SRNIDVNDGP EDQQMKPQTG VGTISALPKV  300
SVHELNSQER ETAISRYKEK KKTRRYDKHV RYESRKARAE SRTRIKGRFA KNCEPIIIST  360
DAHILEAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623938.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1U8NFV60.0A0A1U8NFV6_GOSHI; zinc finger protein CONSTANS-LIKE 13-like
STRINGGorai.004G140600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-98B-box type zinc finger protein with CCT domain