PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G0969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 818aa MW: 89794.5 Da PI: 5.8539 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 9.6e-05 | 613 | 651 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gh_A08G0969 613 RQLIQDRIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 651 67799************9....777***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.9E-15 | 59 | 149 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.858 | 600 | 650 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-5 | 613 | 656 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-4 | 613 | 654 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MGEAAMGSAL KQPLKNLCCS NGWCYGVFWR FDPRNSMLLT LGDAYYEQKM GPLVDKMLLK 60 FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNENIFQ DESELQDQFS SGIKTIAVIS 120 VGRRGVVQFG STKKILERLE LLAETEKLFY DMGNCHGLTP LEIETCNLDG WFTSFILGQN 180 PTTELGGCSG KPTGWSCSLQ SLIEPSCSVH DYSMNTVQQN LSHLTSQIQT ISMEAQPIST 240 GKIHRVNSLA ANAPCTSEGS ILTSLPSEKG EWDPSIAFPK KDTEQNFQGH STFTSFYSTG 300 ELVDVELRNL DSFGRTKQEQ HSFGTNAGLL DSVISQQRSI EDFNLGDFTT DLSSSFTMDD 360 FSQWFSPFPQ HHILGAGATT TTDPSCSVGF TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA 420 DAFTSNVEKS TMVHDSGNDL FSVTGMDFRL RKAGGFSENI DMPLLHSVNK VVASGMSSSM 480 AGKRKGLFSE LGLEELLRGV NNSSSVAKSS VEDEIFTTRR RKIENSSSNF HLGQLEGLSC 540 SGGGMNLAQY SHTWDKSNDT IFGKEFHLKS QVGLWIDDSY GVKAGNAVVT TAKKPTRKRA 600 KPGESSRPRP KDRQLIQDRI KELRGIIPHS GKQLSIDHLL ERTIKYLLFL QGVTKYADKI 660 KQADEPKLIG QENRKLLKHN TMSGGATWAF EVGAQSIPIV VKDLNPPGQM LVEMLCEDRE 720 FFLEIAEVIR GFPLNILKGV MELQEDKIWA RFIVEADKQI ERTGIIWSLL PLLQQKDNSG 780 IDCATQPSGD MDGGISLLNN PQQQPFLLRP VSVAETLQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735288.1 | 0.0 | PREDICTED: transcription factor bHLH157-like | ||||
TrEMBL | A0A1U8NBE6 | 0.0 | A0A1U8NBE6_GOSHI; transcription factor bHLH157-like | ||||
STRING | Gorai.004G130500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15615 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 5e-43 | conserved peptide upstream open reading frame 7 |