PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0932
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 562aa    MW: 62656.8 Da    PI: 5.8288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0932genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5391371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptdeel+++yL++k++gk++++ evi+e+d++k+ePwdLp+  ++++++ ew+fF++ d+ky++g+r nratk+gyWkatgkd++++s +
  Gh_A08G0932   9 LPTGFRFRPTDEELIDFYLRAKINGKRNDEVEVIREIDVCKCEPWDLPHmsAIETRDPEWFFFCPLDRKYPNGNRLNRATKAGYWKATGKDRKIKS-G 105
                  699************************9999*****************4346777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + l+g+kk+Lvfy+grap+g++t+Wvmheyr 
  Gh_A08G0932 106 SCLIGMKKSLVFYTGRAPRGKRTNWVMHEYRT 137
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-584160IPR003441NAC domain
PROSITE profilePS5100556.929160IPR003441NAC domain
PfamPF023652.9E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAVLSLNSLP TGFRFRPTDE ELIDFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA  60
IETRDPEWFF FCPLDRKYPN GNRLNRATKA GYWKATGKDR KIKSGSCLIG MKKSLVFYTG  120
RAPRGKRTNW VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE  180
DMQSELEGPQ DSPALEGVAQ PKFPHNNGTF SWGPPNDVVS NAVPPMLECN IVDSKAYSVT  240
GQVAEIVTDK VDQVGEALNH FYDPMVEPPD RKFFSPLRSH VEAEQAPWTF HQVGSSLSAV  300
EVEHETNKND ASISDFLNSI LNNSDDYYSV DSSSQQYSAN ESETPKTMAV VEDGRIRSEQ  360
DAEVAQVLMI GSQLGREIAD KGTPLEIKAT AQYCTIPINK DIVLNSKEEP SNHVTTTCNL  420
DNAITGIRIR SHAAQSQPNT ENSVTQGYAP RRIRLQCKLQ VGTYYSEGKK HGSKPVVTKD  480
VKVMEQNIVS GTDAACGTMD IPHEISLSES SIKGFLKSKA IVSAGCSKQF STSRWHKQFA  540
VMFQVALMLL LLLVLVSKMN IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-44816314171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706254.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A1U8KZP90.0A0A1U8KZP9_GOSHI; NAC domain-containing protein 62-like
STRINGGorai.004G125900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-90NAC domain containing protein 62