PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G0907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26987.1 Da PI: 7.6556 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 30 | 83 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f++eq++ Le+ Fe++ ++ +++ + A++lgL+ rqV +WFqN+Ra++k Gh_A08G0907 30 KKKRFSDEQIRLLESIFESETKLEPRKKMQPASELGLQPRQVAIWFQNKRARWK 83 5677*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.6e-38 | 30 | 117 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+r+s+eq++lLE+ Fe+e+kLep++K++ a+eLglqprqva+WFqn+RAR+k+kq E+dy++Lk++yd+l+++ e+L+ke+++L Gh_A08G0907 30 KKKRFSDEQIRLLESIFESETKLEPRKKMQPASELGLQPRQVAIWFQNKRARWKSKQKEQDYNTLKANYDNLESRFESLKKEKQSLIL 117 9***********************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-17 | 21 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-14 | 27 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.2E-15 | 30 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 32 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.75E-12 | 33 | 86 | No hit | No description |
Pfam | PF02183 | 6.2E-11 | 85 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
METEYHPAVD EAIAGQAPQI PRNKKMNKLK KKRFSDEQIR LLESIFESET KLEPRKKMQP 60 ASELGLQPRQ VAIWFQNKRA RWKSKQKEQD YNTLKANYDN LESRFESLKK EKQSLILLIQ 120 KSSQLLEEPR KGRKGLDGSS TDGGGGGGGS KYGENKWETE AEGQPSFQHK ECLGLQTENE 180 RDDVKQTGQG GEEFLIMDEY RNDSPASPDK FYGLHSTGMF DHSYTNFQWL NFWT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735985.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1U8NAG1 | 1e-172 | A0A1U8NAG1_GOSHI; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | Gorai.004G123100.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18999 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 5e-38 | homeobox 7 |