PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G0775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 369aa MW: 40961.9 Da PI: 6.5833 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.8e-07 | 20 | 51 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+++++ + +fC++++ ++C +C + +H+ Gh_A08G0775 20 KTCDTCKSAAAAIFCRSDSAFMCLNCDSRIHS 51 79*****************************4 PP | |||||||
2 | zf-B_box | 27.3 | 7.4e-09 | 64 | 109 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C + +H+ H++vp+ Gh_A08G0775 64 VWMCEVCEQAPAAVTCKADAAALCVACDSDIHSAnplarrHERVPV 109 689*****************************66899999*99986 PP | |||||||
3 | CCT | 69.8 | 6.7e-24 | 292 | 336 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++e Gh_A08G0775 292 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRNE 336 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.67 | 17 | 66 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-4 | 17 | 52 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.20E-7 | 22 | 66 | No hit | No description |
PROSITE profile | PS50119 | 10.808 | 62 | 109 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-15 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.3E-7 | 64 | 109 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.52E-9 | 65 | 109 | No hit | No description |
PROSITE profile | PS51017 | 16.817 | 292 | 334 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.6E-18 | 292 | 334 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MVIDTTNVKG LTGRWGMAAK TCDTCKSAAA AIFCRSDSAF MCLNCDSRIH SVNDKLVSCR 60 HERVWMCEVC EQAPAAVTCK ADAAALCVAC DSDIHSANPL ARRHERVPVQ PFFDSADSIV 120 KSSSFSFLVP TDPNTGSNCQ QEDVEMGSWL LPNPKLTMET NHVKTGDFFF SDMDPFIDFE 180 YQDSFQQHHD GAMDSVVPVQ TKPAIISMIN NENCFDVDFC RSKFPTFSYQ TKSQSHSVSS 240 SSLEVGVVPD GNSVSDISYT LGRTMGDPSA PIWAATSNNQ PPPQAQVGGM DREARVLRYR 300 EKRKNRKFEK TIRYASRKAY AESRPRIKGR FAKRNETDNE VDHMYNSASS AATAAAFMYD 360 NQYGIVPSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1131 | 0.0 | root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM202012 | 0.0 | KM202012.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202014 | 0.0 | KM202014.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202016 | 0.0 | KM202016.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202018 | 0.0 | KM202018.1 Gossypium hirsutum cultivar JM CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202022 | 0.0 | KM202022.1 Gossypium hirsutum cultivar Morrilli CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202024 | 0.0 | KM202024.1 Gossypium hirsutum cultivar yucatanense CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202026 | 0.0 | KM202026.1 Gossypium hirsutum cultivar Richmondii CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202028 | 0.0 | KM202028.1 Gossypium hirsutum var. marie-galante CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202030 | 0.0 | KM202030.1 Gossypium hirsutum subsp. latifolium CONSTANS-like 7 protein gene, complete cds. | |||
GenBank | KM202032 | 0.0 | KM202032.1 Gossypium hirsutum f. palmeri CONSTANS-like 7 protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016736434.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like | ||||
Refseq | XP_017603421.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like | ||||
Swissprot | Q9FHH8 | 1e-127 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A1Z2TI06 | 0.0 | A0A1Z2TI06_GOSHI; CONSTANS-like protein | ||||
STRING | Gorai.004G102000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-122 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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