PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0656
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 677aa    MW: 76044.9 Da    PI: 7.9605
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0656genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.7e-21130232199
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f k+ltpsd  ++g +++pk++a++         +  +  +++l  +d++g  W +++ +r++++r +lt+GW+ Fv +++L +gD+++F +   +++
  Gh_A08G0656 130 FSKKLTPSDIKTHGGFSIPKRHANDGclplldmsQ--EIPQQELLATDLHGHPWYFRHVFRGYPKRNLLTTGWSTFVTSKKLAAGDSLIFLR--GENG 223
                  88*********************777*****9643..444569************************************************4..3777 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  e+ v+v+r+
  Gh_A08G0656 224 EFGVGVRRS 232
                  779999985 PP
2Auxin_resp93.53.3e-31258340183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha++t+s+F+v+Y+P++ +seF+ +++++ ka++  ++ G+R +m++e+ +s e+r  Gt++g++dldp+rW+nSkWr++k
  Gh_A08G0656 258 AFHAFATRSIFNVYYRPWTRSSEFITPLDQYIKAVQFDYCFGTRCRMRVEGGESGEQRSLGTIIGTEDLDPIRWQNSKWRCVK 340
                  6799*****************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-32123234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-26124232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-18128231No hitNo description
PfamPF023621.7E-18130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492130233IPR003340B3 DNA binding domain
SMARTSM010195.4E-13130233IPR003340B3 DNA binding domain
PfamPF065071.8E-27258340IPR010525Auxin response factor
SuperFamilySSF542771.86E-8576656No hitNo description
PROSITE profilePS5174520.053578663IPR000270PB1 domain
PfamPF023095.8E-7618667IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDGEGHGSKA KFPFHSTRGE NNDLYSKLWH ACAGPSVYVP RSGDKVLYFP QGHMEQVEAY  60
MSEDGTMEMP IYNLPWKILC RVLHVELKVE PDTDEIFAEI ILLPEAEQDE QSMEHRYYRA  120
SPRENYSRYF SKKLTPSDIK THGGFSIPKR HANDGCLPLL DMSQEIPQQE LLATDLHGHP  180
WYFRHVFRGY PKRNLLTTGW STFVTSKKLA AGDSLIFLRG ENGEFGVGVR RSMTKLLNSP  240
SPSIISAHSV RHGILASAFH AFATRSIFNV YYRPWTRSSE FITPLDQYIK AVQFDYCFGT  300
RCRMRVEGGE SGEQRSLGTI IGTEDLDPIR WQNSKWRCVK VKWDPAASSV LLPERVCPWS  360
IDLTEFTKKK KTSTLHHQKR ARPNNASSPE FSCLLMDGML HGTAKNQSQS SSGVLQGQED  420
SDTCVNQSSV LRQSLPHLLP QDPGCASMQQ QMHKQLQIQI PTCDTFYQCS SSTAHFSGRK  480
VPGLCNGLSA FSSNRVHDDA RATKNGTSLS RPNGSHRCMV FGVNLFNGSP ELPSPQVLTS  540
SEVQCLCSTP LTSQSSVSIA SKGISSKQCN NCCSIGDQTC TKVLKYGTNL GRSVDLYRFN  600
GYKGLILELD HMFDFNGKLI DGSSGWHITY TDEDGDMMLI GDPYPWQKFQ HEVRRMVIHP  660
KEEINRLNPS SPSSASY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1192136216353Auxin response factor 1
4ldw_A1e-1192136216353Auxin response factor 1
4ldw_B1e-1192136216353Auxin response factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5894777e-58JX589477.1 Gossypium hirsutum clone NBRI_GE24193 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739188.10.0PREDICTED: auxin response factor 24-like
TrEMBLA0A1U8NMC40.0A0A1U8NMC4_GOSHI; Auxin response factor
STRINGGorai.004G085400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-134auxin response factor 2