PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0499
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 229aa    MW: 25810.7 Da    PI: 10.4045
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0499genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32149205158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq Rak+e ekk+ +k rkpylheSRh hA+rR+RgsgGrF
  Gh_A08G0499 149 EEPVYVNAKQYHGILRRRQIRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGSGGRF 205
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-36147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.039148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-28150205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-24151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-24182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MPAKPRNEDQ RMHHGAQSVL NSTASLEPWW KAVGIDLLGE AASKSTSAEK KNGPTADGDG  60
RNGHDEQYLK HVPSAALKHV PSAAPLTLVE HLEPNSQMEL AGHSIVLKSY PCSDSQYSGI  120
LASYGPQIMV SPLYGMHHAR MPLPLQMEEE PVYVNAKQYH GILRRRQIRA KAELEKKVIK  180
VRKPYLHESR HLHAMRRARG SGGRFLNKRS WMITSPVLTQ KRFLYEKRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20149207260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.7131e-121boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5829188e-74JX582918.1 Gossypium hirsutum clone NBRI_GE15843 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741016.11e-164PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1U8NPV61e-163A0A1U8NPV6_GOSHI; nuclear transcription factor Y subunit A-1-like
STRINGGorai.004G066000.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-42nuclear factor Y, subunit A1