PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0470
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 443aa    MW: 48163.5 Da    PI: 5.589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0470genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3802.9e-116814403374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++le a+ lL ++s+l+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l  ++ + ++s++ ++al+ ++ +sP++kfsh+taNq
  Gh_A08G0470  81 GLLLQCAECVAMDNLEDATDLLPEISQLSSPFGSSPERVGAYFAHALQARVVSSSLRTYSPLDNKSLTLTQSQKIFNALQSYNSISPLVKFSHFTANQ 178
                  58*****************************************************************999**************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le tg+rLa+fA++lg+pfef++l  k  +  +l++L v++
  Gh_A08G0470 179 AIFQALSGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLELTGKRLADFAASLGLPFEFHPLEGKIGNLTDLSQLGVRS 272
                  *************************************************....99*************************9777777889******** PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE++l+g+ei+n
  Gh_A08G0470 273 SEAVVVHWMH--HCLYDITGSDLA----TLRLLTVLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLSVDSLERHTVEQQLFGNEIRN 363
                  ********99..777766666666....9*********************.789******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +va  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Gh_A08G0470 364 IVAVGGPKRTGEVK-VERWGEELRRVGFQPVSLGGNPAAQASLLLGMFPWKGYTLLEENGCLKLGWKDLSLLTASAWQ 440
                  ********998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.09353420IPR005202Transcription factor GRAS
PfamPF035141.0E-11381440IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLQSLVPQSP ISSNTTSSNP SSSMKSKRVE RDVSAATGED STADDPSNKR PNYSSGDKAA  60
AANEHDETVI EGESTGLRLL GLLLQCAECV AMDNLEDATD LLPEISQLSS PFGSSPERVG  120
AYFAHALQAR VVSSSLRTYS PLDNKSLTLT QSQKIFNALQ SYNSISPLVK FSHFTANQAI  180
FQALSGEDCV HVIDLDIMQG LQWPGLFHIL ASRSKKIRSM RITGFGSSSE LLELTGKRLA  240
DFAASLGLPF EFHPLEGKIG NLTDLSQLGV RSSEAVVVHW MHHCLYDITG SDLATLRLLT  300
VLKPKLITIV EQDLSHGGSF LGRFVEALHY YSALFDALGD GLSVDSLERH TVEQQLFGNE  360
IRNIVAVGGP KRTGEVKVER WGEELRRVGF QPVSLGGNPA AQASLLLGMF PWKGYTLLEE  420
NGCLKLGWKD LSLLTASAWQ PSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1638544125380Protein SCARECROW
5b3h_A1e-1638544124379Protein SCARECROW
5b3h_D1e-1638544124379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.76710.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740579.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1U8NRI90.0A0A1U8NRI9_GOSHI; scarecrow-like protein 23
STRINGGorai.004G063200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]