PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0230
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 339aa    MW: 38079.5 Da    PI: 7.2863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0230genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11279324655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+ l P+     +k  + a++L +AveYIk+Lq
  Gh_A08G0230 279 SIAERMRRTRISERMRKLQGLFPNI----DKQTNTADMLDMAVEYIKDLQ 324
                  689*********************5....588*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.018273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-10277328No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
METADYYYLQ QNQQQSCGLM RYRSMPAENR VGFDEYGSDF RSSSSSEMET LFMLCGNGSS  60
GNVSEYEEIS VKQEEEMMYQ IQSLPLENVE SSFGVGTNLG LENSMQRNGN GSNPVRQISS  120
PSQFFSSHGL DNGFNATRKM TTLRACNGIN GEPTSSGRLY NHISFSSAPM PQIAQVENED  180
LASNGNGRNG MNFIPNLMTD SRNNASLSGL KRARERDSDL LSGLSRSQAR NQDCRDCSTA  240
LTHQLSLPTT YEEMDVWQFQ SSVPCKIRAK RGCATHPRSI AERMRRTRIS ERMRKLQGLF  300
PNIDKQTNTA DMLDMAVEYI KDLQKQVKIL RDTKAKCSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92820.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792851e-129JX579285.1 Gossypium hirsutum clone NBRI_GE11491 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712618.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A1U8LGU70.0A0A1U8LGU7_GOSHI; transcription factor bHLH130-like
STRINGGorai.004G035800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-36bHLH family protein